miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31635 5' -52.9 NC_006879.1 + 4292 0.66 0.682258
Target:  5'- aUCuCCCagGCCUUAAuuuCCGAGGGGGg -3'
miRNA:   3'- aAGuGGG--CGGAGUUuu-GGUUCCUCUg -5'
31635 5' -52.9 NC_006879.1 + 11676 0.66 0.670558
Target:  5'- aUCuggaUCGCCUCAccACCGacgugaAGGAGGCg -3'
miRNA:   3'- aAGug--GGCGGAGUuuUGGU------UCCUCUG- -5'
31635 5' -52.9 NC_006879.1 + 12538 0.66 0.663517
Target:  5'- uUUgACCUGCC-CGAAGCCGacgacggcuuucuuuGGGAcGACg -3'
miRNA:   3'- -AAgUGGGCGGaGUUUUGGU---------------UCCU-CUG- -5'
31635 5' -52.9 NC_006879.1 + 15030 0.66 0.658817
Target:  5'- --gGCCCGCCUCAGcacGGCCcuGGcuGCc -3'
miRNA:   3'- aagUGGGCGGAGUU---UUGGuuCCucUG- -5'
31635 5' -52.9 NC_006879.1 + 32166 0.66 0.647047
Target:  5'- -cCACCUGCCUgu--ACCAGGGAaACc -3'
miRNA:   3'- aaGUGGGCGGAguuuUGGUUCCUcUG- -5'
31635 5' -52.9 NC_006879.1 + 5896 0.66 0.647047
Target:  5'- gUgGCCCGCgaguacgugcaaCUCAAcaucgccGCCAAGGAGAg -3'
miRNA:   3'- aAgUGGGCG------------GAGUUu------UGGUUCCUCUg -5'
31635 5' -52.9 NC_006879.1 + 725 0.66 0.635261
Target:  5'- cUCAgCCGCCUCAAAcagacauUCAGGGA-ACa -3'
miRNA:   3'- aAGUgGGCGGAGUUUu------GGUUCCUcUG- -5'
31635 5' -52.9 NC_006879.1 + 10133 0.67 0.599933
Target:  5'- -aCGCuCCGCCcCAAuACgGAGGGGAg -3'
miRNA:   3'- aaGUG-GGCGGaGUUuUGgUUCCUCUg -5'
31635 5' -52.9 NC_006879.1 + 5317 0.67 0.588205
Target:  5'- aUCGCCC-CCUCAAGucgguCUAcGGGGAUa -3'
miRNA:   3'- aAGUGGGcGGAGUUUu----GGUuCCUCUG- -5'
31635 5' -52.9 NC_006879.1 + 9988 0.68 0.534955
Target:  5'- -gCGCCCGCCUCAcGgggcagagcgugcccACCAuGGAGcGCu -3'
miRNA:   3'- aaGUGGGCGGAGUuU---------------UGGUuCCUC-UG- -5'
31635 5' -52.9 NC_006879.1 + 7642 0.69 0.48569
Target:  5'- uUUCGCCCGCgCaccaGAAACCGgaGGGGGAa -3'
miRNA:   3'- -AAGUGGGCG-Gag--UUUUGGU--UCCUCUg -5'
31635 5' -52.9 NC_006879.1 + 8716 0.7 0.402233
Target:  5'- --gGCCauggagCGUCUCGAAGCCAucGGAGACa -3'
miRNA:   3'- aagUGG------GCGGAGUUUUGGUu-CCUCUG- -5'
31635 5' -52.9 NC_006879.1 + 4951 0.72 0.328464
Target:  5'- -aCGCCCGCUUCAGcACCAgcAGGAuGAg -3'
miRNA:   3'- aaGUGGGCGGAGUUuUGGU--UCCU-CUg -5'
31635 5' -52.9 NC_006879.1 + 19467 1.06 0.001129
Target:  5'- uUUCACCCGCCUCAAAACCAAGGAGACc -3'
miRNA:   3'- -AAGUGGGCGGAGUUUUGGUUCCUCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.