miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31636 3' -55.7 NC_006879.1 + 14871 0.66 0.578841
Target:  5'- cGUGGAUUCCGUGaucgacagcguGGUagcuggcgcucGGGCCUAUGCu -3'
miRNA:   3'- cCACCUAGGGUAC-----------CUA-----------CUCGGGUGCG- -5'
31636 3' -55.7 NC_006879.1 + 20768 0.66 0.556575
Target:  5'- uGGUGGGguugugaUCCAUGGGggugUGAGgCCAgUGCa -3'
miRNA:   3'- -CCACCUa------GGGUACCU----ACUCgGGU-GCG- -5'
31636 3' -55.7 NC_006879.1 + 24704 0.66 0.556575
Target:  5'- cGGUGGcGUCCCAccuacggcUGGcuuugaGUGAGCCgGC-Cg -3'
miRNA:   3'- -CCACC-UAGGGU--------ACC------UACUCGGgUGcG- -5'
31636 3' -55.7 NC_006879.1 + 10164 0.67 0.502154
Target:  5'- cGGcUGGGUCUCgacgcggacgucGUGGAUGcggGGCCagGCGCa -3'
miRNA:   3'- -CC-ACCUAGGG------------UACCUAC---UCGGg-UGCG- -5'
31636 3' -55.7 NC_006879.1 + 20261 0.67 0.502154
Target:  5'- cGGUGcGG-CUgGUGGAUGcGCaCCACGUc -3'
miRNA:   3'- -CCAC-CUaGGgUACCUACuCG-GGUGCG- -5'
31636 3' -55.7 NC_006879.1 + 13743 0.69 0.391959
Target:  5'- gGGUgGGAUCCCGUGaccaagcuGGUGAuGCCagGCGUg -3'
miRNA:   3'- -CCA-CCUAGGGUAC--------CUACU-CGGg-UGCG- -5'
31636 3' -55.7 NC_006879.1 + 23472 0.69 0.38274
Target:  5'- cGUGGAggaugCCCAUguaGGAgaccagguugcUGAGCuCCACGUu -3'
miRNA:   3'- cCACCUa----GGGUA---CCU-----------ACUCG-GGUGCG- -5'
31636 3' -55.7 NC_006879.1 + 4161 0.7 0.338858
Target:  5'- --gGGGUCCCAuugccauuauuaUGGAUGAGUgCAUGg -3'
miRNA:   3'- ccaCCUAGGGU------------ACCUACUCGgGUGCg -5'
31636 3' -55.7 NC_006879.1 + 32103 0.71 0.276495
Target:  5'- cGGUGGcgCUguUGGAgcgaaUGAGCUUugGCu -3'
miRNA:   3'- -CCACCuaGGguACCU-----ACUCGGGugCG- -5'
31636 3' -55.7 NC_006879.1 + 4826 0.72 0.241093
Target:  5'- gGGUGG-UCUCGgugacggugaagGGAUGAGCCCcgggcuggGCGCu -3'
miRNA:   3'- -CCACCuAGGGUa-----------CCUACUCGGG--------UGCG- -5'
31636 3' -55.7 NC_006879.1 + 19969 0.8 0.07357
Target:  5'- uGGUGGGUCCCAUGu---AGCCCACGa -3'
miRNA:   3'- -CCACCUAGGGUACcuacUCGGGUGCg -5'
31636 3' -55.7 NC_006879.1 + 20146 1.14 0.000237
Target:  5'- aGGUGGAUCCCAUGGAUGAGCCCACGCu -3'
miRNA:   3'- -CCACCUAGGGUACCUACUCGGGUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.