miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31638 3' -58.9 NC_006879.1 + 17368 0.66 0.397486
Target:  5'- uGGCUCCUCucuGGCcucUGGgGUUuCUGGCa -3'
miRNA:   3'- cCCGAGGAGu--UCGc--GUCgCGA-GACCG- -5'
31638 3' -58.9 NC_006879.1 + 14425 0.66 0.388273
Target:  5'- uGGGU-----AAGCGCGGUGgaCUGGCg -3'
miRNA:   3'- -CCCGaggagUUCGCGUCGCgaGACCG- -5'
31638 3' -58.9 NC_006879.1 + 11207 0.66 0.370272
Target:  5'- -cGCUCCUCGuccccGGCGCccgccAGCGCccUCUgcaGGCu -3'
miRNA:   3'- ccCGAGGAGU-----UCGCG-----UCGCG--AGA---CCG- -5'
31638 3' -58.9 NC_006879.1 + 10492 0.66 0.364984
Target:  5'- cGGCUCCugagggcggaggauuUCGAGCcCgacgAGCGUUCUGGg -3'
miRNA:   3'- cCCGAGG---------------AGUUCGcG----UCGCGAGACCg -5'
31638 3' -58.9 NC_006879.1 + 9311 0.67 0.34436
Target:  5'- uGGGCccggCCUguugaauGCGCAgGCGCUC-GGCc -3'
miRNA:   3'- -CCCGa---GGAguu----CGCGU-CGCGAGaCCG- -5'
31638 3' -58.9 NC_006879.1 + 5856 0.68 0.2789
Target:  5'- cGGGCcacgcaccgccaCUCGgggaacacGGCGguGCGCUCgucgGGCa -3'
miRNA:   3'- -CCCGag----------GAGU--------UCGCguCGCGAGa---CCG- -5'
31638 3' -58.9 NC_006879.1 + 16595 0.68 0.274624
Target:  5'- uGGCUCCgcggCAcGGCucGCGGcCGCUCaugGGCa -3'
miRNA:   3'- cCCGAGGa---GU-UCG--CGUC-GCGAGa--CCG- -5'
31638 3' -58.9 NC_006879.1 + 5095 0.7 0.21666
Target:  5'- cGGCUCCgcacUGAGCGCAGaCGgUCUcGCa -3'
miRNA:   3'- cCCGAGGa---GUUCGCGUC-GCgAGAcCG- -5'
31638 3' -58.9 NC_006879.1 + 15092 0.7 0.199803
Target:  5'- cGGGC-CCUCccGGCgGCGGCGU--UGGCg -3'
miRNA:   3'- -CCCGaGGAGu-UCG-CGUCGCGagACCG- -5'
31638 3' -58.9 NC_006879.1 + 23635 0.79 0.0435
Target:  5'- cGGUUUCagCGAGCGCacggucgccAGCGCUCUGGCg -3'
miRNA:   3'- cCCGAGGa-GUUCGCG---------UCGCGAGACCG- -5'
31638 3' -58.9 NC_006879.1 + 20563 1.12 0.000126
Target:  5'- gGGGCUCCUCAAGCGCAGCGCUCUGGCc -3'
miRNA:   3'- -CCCGAGGAGUUCGCGUCGCGAGACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.