miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31649 5' -60 NC_006879.1 + 8939 0.66 0.384486
Target:  5'- cGGuCAgacgacgacGUCGCCGCCcCGuCCCCGuCGCa -3'
miRNA:   3'- -CC-GU---------UAGUGGCGGuGU-GGGGCcGCGg -5'
31649 5' -60 NC_006879.1 + 20781 0.66 0.384486
Target:  5'- --aGGUCGCC-CC-CACCCUG-CGCCg -3'
miRNA:   3'- ccgUUAGUGGcGGuGUGGGGCcGCGG- -5'
31649 5' -60 NC_006879.1 + 16045 0.66 0.384486
Target:  5'- aGGCGAccCGCuCGUUACgGCCCCGccaaCGCCa -3'
miRNA:   3'- -CCGUUa-GUG-GCGGUG-UGGGGCc---GCGG- -5'
31649 5' -60 NC_006879.1 + 16171 0.66 0.375657
Target:  5'- ---cGUCGCCGCCGcCGCuCCCGucGUGCUc -3'
miRNA:   3'- ccguUAGUGGCGGU-GUG-GGGC--CGCGG- -5'
31649 5' -60 NC_006879.1 + 19131 0.66 0.375657
Target:  5'- uGCAAUUaaaaaccuGCUGCUGCuCCCCGGUuCCu -3'
miRNA:   3'- cCGUUAG--------UGGCGGUGuGGGGCCGcGG- -5'
31649 5' -60 NC_006879.1 + 11282 0.66 0.375657
Target:  5'- gGGUAG-C-CCGCCGC-CUCCaaGGCGCg -3'
miRNA:   3'- -CCGUUaGuGGCGGUGuGGGG--CCGCGg -5'
31649 5' -60 NC_006879.1 + 14987 0.66 0.375657
Target:  5'- gGGCGacGUCuccgaugcaGCCGCCucuugcggcgaGCAUaggCCCGaGCGCCa -3'
miRNA:   3'- -CCGU--UAG---------UGGCGG-----------UGUG---GGGC-CGCGG- -5'
31649 5' -60 NC_006879.1 + 8636 0.66 0.366966
Target:  5'- aGCAcAUCGCCaCCACGCUcaacuaccucuuCCaGCGCCu -3'
miRNA:   3'- cCGU-UAGUGGcGGUGUGG------------GGcCGCGG- -5'
31649 5' -60 NC_006879.1 + 16817 0.66 0.366966
Target:  5'- gGGUggUgACCG--GCAUCCaCGGCGCg -3'
miRNA:   3'- -CCGuuAgUGGCggUGUGGG-GCCGCGg -5'
31649 5' -60 NC_006879.1 + 2852 0.66 0.357567
Target:  5'- aGGCAuaaacaCGCCGCgucuaGCACCUaggugaaCGGCGCa -3'
miRNA:   3'- -CCGUua----GUGGCGg----UGUGGG-------GCCGCGg -5'
31649 5' -60 NC_006879.1 + 9331 0.66 0.350004
Target:  5'- cGCAggCGCUcgGCCAUGCCCCaG-GCCu -3'
miRNA:   3'- cCGUuaGUGG--CGGUGUGGGGcCgCGG- -5'
31649 5' -60 NC_006879.1 + 15953 0.66 0.34917
Target:  5'- cGGgGAUCuggauauccACCGUCuGCACCCCgagaccaGGgGCCa -3'
miRNA:   3'- -CCgUUAG---------UGGCGG-UGUGGGG-------CCgCGG- -5'
31649 5' -60 NC_006879.1 + 7250 0.66 0.341734
Target:  5'- -----cCACgGCCAUuuuCUCCGGCGUCa -3'
miRNA:   3'- ccguuaGUGgCGGUGu--GGGGCCGCGG- -5'
31649 5' -60 NC_006879.1 + 17439 0.67 0.33684
Target:  5'- cGCcuccuauGUUACCGCCAgagacgcgugacuguCGCCgCGaGCGCCg -3'
miRNA:   3'- cCGu------UAGUGGCGGU---------------GUGGgGC-CGCGG- -5'
31649 5' -60 NC_006879.1 + 9004 0.67 0.333606
Target:  5'- cGCcGUCACCGagaCCAUGCgucgCCGGCGCg -3'
miRNA:   3'- cCGuUAGUGGC---GGUGUGg---GGCCGCGg -5'
31649 5' -60 NC_006879.1 + 165 0.67 0.29511
Target:  5'- -cCAcUC-CCGCCcCGCCCUcGCGCCa -3'
miRNA:   3'- ccGUuAGuGGCGGuGUGGGGcCGCGG- -5'
31649 5' -60 NC_006879.1 + 13885 0.67 0.29511
Target:  5'- cGGCucugagugaAGUcCACa-CCGCACCCCGGCaGCa -3'
miRNA:   3'- -CCG---------UUA-GUGgcGGUGUGGGGCCG-CGg -5'
31649 5' -60 NC_006879.1 + 8989 0.68 0.287119
Target:  5'- cGCAGUucgaagaCGCCGCCGCGCa--GaGCGCCc -3'
miRNA:   3'- cCGUUA-------GUGGCGGUGUGgggC-CGCGG- -5'
31649 5' -60 NC_006879.1 + 13190 0.68 0.280708
Target:  5'- aGCGAacgUGCCgGCCACGCUggaGGCGCCu -3'
miRNA:   3'- cCGUUa--GUGG-CGGUGUGGgg-CCGCGG- -5'
31649 5' -60 NC_006879.1 + 16015 0.68 0.273719
Target:  5'- uGGUAcgaauaCGCCGCcCCUCGGCGUCa -3'
miRNA:   3'- -CCGUuagug-GCGGUGuGGGGCCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.