miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31657 3' -55.5 NC_006883.1 + 22021 1.13 0.003447
Target:  5'- aCCCGUAGGACCAGCAGGACCAGUUGGa -3'
miRNA:   3'- -GGGCAUCCUGGUCGUCCUGGUCAACC- -5'
31657 3' -55.5 NC_006883.1 + 26632 1.09 0.006706
Target:  5'- aCCUGUGGGACCAGCAGGACCAGUUGGa -3'
miRNA:   3'- -GGGCAUCCUGGUCGUCCUGGUCAACC- -5'
31657 3' -55.5 NC_006883.1 + 26821 0.97 0.038394
Target:  5'- aCCUugGGGACCAGCAGGACCAGUUGGa -3'
miRNA:   3'- -GGGcaUCCUGGUCGUCCUGGUCAACC- -5'
31657 3' -55.5 NC_006883.1 + 23392 0.96 0.044908
Target:  5'- aCCUGUGGGACCuGUGGGACCAGUUGGa -3'
miRNA:   3'- -GGGCAUCCUGGuCGUCCUGGUCAACC- -5'
31657 3' -55.5 NC_006883.1 + 26794 0.96 0.046094
Target:  5'- aCCUGguGGACCAGCAGGACCAGUUGGa -3'
miRNA:   3'- -GGGCauCCUGGUCGUCCUGGUCAACC- -5'
31657 3' -55.5 NC_006883.1 + 28237 0.95 0.047311
Target:  5'- aCCaGUAGGACCAGCAGGACCAGUcGGa -3'
miRNA:   3'- gGG-CAUCCUGGUCGUCCUGGUCAaCC- -5'
31657 3' -55.5 NC_006883.1 + 21734 0.94 0.061327
Target:  5'- aCCUGgAGGACCAGCAGGACCAGUaGGa -3'
miRNA:   3'- -GGGCaUCCUGGUCGUCCUGGUCAaCC- -5'
31657 3' -55.5 NC_006883.1 + 22069 0.91 0.083482
Target:  5'- aCCUGgAGGACCaccAGCAGGACCAGUUGGa -3'
miRNA:   3'- -GGGCaUCCUGG---UCGUCCUGGUCAACC- -5'
31657 3' -55.5 NC_006883.1 + 222923 0.91 0.08564
Target:  5'- aCCaGUAGGACCAGCAGGACCAGUa-- -3'
miRNA:   3'- gGG-CAUCCUGGUCGUCCUGGUCAacc -5'
31657 3' -55.5 NC_006883.1 + 28120 0.91 0.090117
Target:  5'- aCCUGUAGGuCCuGUAGGACCAGUUGGa -3'
miRNA:   3'- -GGGCAUCCuGGuCGUCCUGGUCAACC- -5'
31657 3' -55.5 NC_006883.1 + 28357 0.91 0.092437
Target:  5'- uCCUGgAGGACCAGCAGGACCAGUuccgccUGGa -3'
miRNA:   3'- -GGGCaUCCUGGUCGUCCUGGUCA------ACC- -5'
31657 3' -55.5 NC_006883.1 + 28184 0.9 0.09725
Target:  5'- uUCCGUcAGcACCAGCAGGACCAGUUGGa -3'
miRNA:   3'- -GGGCA-UCcUGGUCGUCCUGGUCAACC- -5'
31657 3' -55.5 NC_006883.1 + 23158 0.89 0.121975
Target:  5'- aCCUGgAGcACCAGCAGGACCAGUUGGa -3'
miRNA:   3'- -GGGCaUCcUGGUCGUCCUGGUCAACC- -5'
31657 3' -55.5 NC_006883.1 + 28147 0.88 0.138126
Target:  5'- aCCUGaAGGACCAGUuGGACCAGUUGGn -3'
miRNA:   3'- -GGGCaUCCUGGUCGuCCUGGUCAACC- -5'
31657 3' -55.5 NC_006883.1 + 23689 0.87 0.156218
Target:  5'- aCCUGgAGGACCAGCAGGACCAGg--- -3'
miRNA:   3'- -GGGCaUCCUGGUCGUCCUGGUCaacc -5'
31657 3' -55.5 NC_006883.1 + 22207 0.87 0.156218
Target:  5'- aCCUGgAGGACCAGCAGGACCAGg--- -3'
miRNA:   3'- -GGGCaUCCUGGUCGUCCUGGUCaacc -5'
31657 3' -55.5 NC_006883.1 + 28315 0.85 0.203722
Target:  5'- aCCUGgAGGACCaucaucaccAGUAGGACCAGUUGGa -3'
miRNA:   3'- -GGGCaUCCUGG---------UCGUCCUGGUCAACC- -5'
31657 3' -55.5 NC_006883.1 + 23943 0.83 0.245739
Target:  5'- aCCaGUcGGACCAGUuGGACCAGUUGGa -3'
miRNA:   3'- gGG-CAuCCUGGUCGuCCUGGUCAACC- -5'
31657 3' -55.5 NC_006883.1 + 23233 0.83 0.26326
Target:  5'- aCCUGgAGGACCaccAGCAGGACCAGgaGGa -3'
miRNA:   3'- -GGGCaUCCUGG---UCGUCCUGGUCaaCC- -5'
31657 3' -55.5 NC_006883.1 + 23916 0.83 0.269322
Target:  5'- aCCUGUAGGACCuGCuGGACCuGUUGa -3'
miRNA:   3'- -GGGCAUCCUGGuCGuCCUGGuCAACc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.