miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31657 3' -55.5 NC_006883.1 + 21734 0.94 0.061327
Target:  5'- aCCUGgAGGACCAGCAGGACCAGUaGGa -3'
miRNA:   3'- -GGGCaUCCUGGUCGUCCUGGUCAaCC- -5'
31657 3' -55.5 NC_006883.1 + 21770 0.79 0.414361
Target:  5'- aCCUGgAGGACCAGaAGGACCAGUUa- -3'
miRNA:   3'- -GGGCaUCCUGGUCgUCCUGGUCAAcc -5'
31657 3' -55.5 NC_006883.1 + 21815 0.82 0.308065
Target:  5'- aCCUugAGGGCCAGCAGGACCAGg--- -3'
miRNA:   3'- -GGGcaUCCUGGUCGUCCUGGUCaacc -5'
31657 3' -55.5 NC_006883.1 + 21868 0.8 0.358465
Target:  5'- aCCag-AGGACCAGCAGGuCCAGUaGGa -3'
miRNA:   3'- -GGgcaUCCUGGUCGUCCuGGUCAaCC- -5'
31657 3' -55.5 NC_006883.1 + 21925 0.69 0.913593
Target:  5'- aCCUGUuGGACCAGCAucaccuugcGGACCuugcGGa -3'
miRNA:   3'- -GGGCAuCCUGGUCGU---------CCUGGucaaCC- -5'
31657 3' -55.5 NC_006883.1 + 21967 0.8 0.401117
Target:  5'- aCCUGcAGGACCaggagauccaguaccAGgAGGACCAGUUGGa -3'
miRNA:   3'- -GGGCaUCCUGG---------------UCgUCCUGGUCAACC- -5'
31657 3' -55.5 NC_006883.1 + 22021 1.13 0.003447
Target:  5'- aCCCGUAGGACCAGCAGGACCAGUUGGa -3'
miRNA:   3'- -GGGCAUCCUGGUCGUCCUGGUCAACC- -5'
31657 3' -55.5 NC_006883.1 + 22069 0.91 0.083482
Target:  5'- aCCUGgAGGACCaccAGCAGGACCAGUUGGa -3'
miRNA:   3'- -GGGCaUCCUGG---UCGUCCUGGUCAACC- -5'
31657 3' -55.5 NC_006883.1 + 22096 0.68 0.939078
Target:  5'- aCCUGgAGGACCAcUuGGACCAGgaGGn -3'
miRNA:   3'- -GGGCaUCCUGGUcGuCCUGGUCaaCC- -5'
31657 3' -55.5 NC_006883.1 + 22132 0.72 0.780137
Target:  5'- aCCacuuGGACCAGCAGGACCAu---- -3'
miRNA:   3'- -GGgcauCCUGGUCGUCCUGGUcaacc -5'
31657 3' -55.5 NC_006883.1 + 22171 0.68 0.939078
Target:  5'- aCCUGgaggaccaccacUAGGACCuGgAGGACCAGgUGa -3'
miRNA:   3'- -GGGC------------AUCCUGGuCgUCCUGGUCaACc -5'
31657 3' -55.5 NC_006883.1 + 22207 0.87 0.156218
Target:  5'- aCCUGgAGGACCAGCAGGACCAGg--- -3'
miRNA:   3'- -GGGCaUCCUGGUCGUCCUGGUCaacc -5'
31657 3' -55.5 NC_006883.1 + 22244 0.76 0.598421
Target:  5'- aUCCaGcAGGACCAGgAGGACCAcUUGGa -3'
miRNA:   3'- -GGG-CaUCCUGGUCgUCCUGGUcAACC- -5'
31657 3' -55.5 NC_006883.1 + 23158 0.89 0.121975
Target:  5'- aCCUGgAGcACCAGCAGGACCAGUUGGa -3'
miRNA:   3'- -GGGCaUCcUGGUCGUCCUGGUCAACC- -5'
31657 3' -55.5 NC_006883.1 + 23185 0.76 0.559564
Target:  5'- aCCaucAGGACCAGCAGGuCCAGUUa- -3'
miRNA:   3'- gGGca-UCCUGGUCGUCCuGGUCAAcc -5'
31657 3' -55.5 NC_006883.1 + 23233 0.83 0.26326
Target:  5'- aCCUGgAGGACCaccAGCAGGACCAGgaGGa -3'
miRNA:   3'- -GGGCaUCCUGG---UCGUCCUGGUCaaCC- -5'
31657 3' -55.5 NC_006883.1 + 23269 0.79 0.431287
Target:  5'- aCC--AGGAgcaccaucaucaCCAGCAGGACCAGUUGGn -3'
miRNA:   3'- gGGcaUCCU------------GGUCGUCCUGGUCAACC- -5'
31657 3' -55.5 NC_006883.1 + 23332 0.76 0.559564
Target:  5'- aCCUGgAGaACCAGCAGGACCuugaggaccAGUUGGa -3'
miRNA:   3'- -GGGCaUCcUGGUCGUCCUGG---------UCAACC- -5'
31657 3' -55.5 NC_006883.1 + 23365 0.79 0.422773
Target:  5'- aCCUGgauuugaAGGACCuaCAGGACCAGUUGGa -3'
miRNA:   3'- -GGGCa------UCCUGGucGUCCUGGUCAACC- -5'
31657 3' -55.5 NC_006883.1 + 23392 0.96 0.044908
Target:  5'- aCCUGUGGGACCuGUGGGACCAGUUGGa -3'
miRNA:   3'- -GGGCAUCCUGGuCGUCCUGGUCAACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.