miRNA display CGI


Results 21 - 40 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31657 3' -55.5 NC_006883.1 + 23419 0.81 0.350923
Target:  5'- aCCUGUAGGACCAuCuGGuCCAGUUGGn -3'
miRNA:   3'- -GGGCAUCCUGGUcGuCCuGGUCAACC- -5'
31657 3' -55.5 NC_006883.1 + 23689 0.87 0.156218
Target:  5'- aCCUGgAGGACCAGCAGGACCAGg--- -3'
miRNA:   3'- -GGGCaUCCUGGUCGUCCUGGUCaacc -5'
31657 3' -55.5 NC_006883.1 + 23716 0.77 0.502759
Target:  5'- aCCUGgAGGACCuGCuGGACCAGaUGGn -3'
miRNA:   3'- -GGGCaUCCUGGuCGuCCUGGUCaACC- -5'
31657 3' -55.5 NC_006883.1 + 23916 0.83 0.269322
Target:  5'- aCCUGUAGGACCuGCuGGACCuGUUGa -3'
miRNA:   3'- -GGGCAUCCUGGuCGuCCUGGuCAACc -5'
31657 3' -55.5 NC_006883.1 + 23943 0.83 0.245739
Target:  5'- aCCaGUcGGACCAGUuGGACCAGUUGGa -3'
miRNA:   3'- gGG-CAuCCUGGUCGuCCUGGUCAACC- -5'
31657 3' -55.5 NC_006883.1 + 24948 0.67 0.968696
Target:  5'- aCCUGUAGGACCuGgAGGAgCAa---- -3'
miRNA:   3'- -GGGCAUCCUGGuCgUCCUgGUcaacc -5'
31657 3' -55.5 NC_006883.1 + 25002 0.74 0.686514
Target:  5'- aCCUGgAGGACCGcUAGGACCAcUUGGa -3'
miRNA:   3'- -GGGCaUCCUGGUcGUCCUGGUcAACC- -5'
31657 3' -55.5 NC_006883.1 + 26542 0.75 0.608208
Target:  5'- aCCUGUAGGACCuGCuGGACCAu---- -3'
miRNA:   3'- -GGGCAUCCUGGuCGuCCUGGUcaacc -5'
31657 3' -55.5 NC_006883.1 + 26632 1.09 0.006706
Target:  5'- aCCUGUGGGACCAGCAGGACCAGUUGGa -3'
miRNA:   3'- -GGGCAUCCUGGUCGUCCUGGUCAACC- -5'
31657 3' -55.5 NC_006883.1 + 26668 0.81 0.343494
Target:  5'- aCCUGgAGGACCGuCuGGACCAGUUGGa -3'
miRNA:   3'- -GGGCaUCCUGGUcGuCCUGGUCAACC- -5'
31657 3' -55.5 NC_006883.1 + 26767 0.69 0.919129
Target:  5'- aCCUGcAGGACCaguugcaccAGCAGGACCAu---- -3'
miRNA:   3'- -GGGCaUCCUGG---------UCGUCCUGGUcaacc -5'
31657 3' -55.5 NC_006883.1 + 26794 0.96 0.046094
Target:  5'- aCCUGguGGACCAGCAGGACCAGUUGGa -3'
miRNA:   3'- -GGGCauCCUGGUCGUCCUGGUCAACC- -5'
31657 3' -55.5 NC_006883.1 + 26821 0.97 0.038394
Target:  5'- aCCUugGGGACCAGCAGGACCAGUUGGa -3'
miRNA:   3'- -GGGcaUCCUGGUCGUCCUGGUCAACC- -5'
31657 3' -55.5 NC_006883.1 + 26979 0.69 0.924446
Target:  5'- aCCUGgAGaACCAGCAGGACCuugUGa -3'
miRNA:   3'- -GGGCaUCcUGGUCGUCCUGGucaACc -5'
31657 3' -55.5 NC_006883.1 + 27278 0.66 0.97881
Target:  5'- uCCUccAGGuCCAGguGGuCCAGgUGGu -3'
miRNA:   3'- -GGGcaUCCuGGUCguCCuGGUCaACC- -5'
31657 3' -55.5 NC_006883.1 + 27503 0.81 0.343494
Target:  5'- aCCUGUAGGACCuGCuGGACCuGUaGGa -3'
miRNA:   3'- -GGGCAUCCUGGuCGuCCUGGuCAaCC- -5'
31657 3' -55.5 NC_006883.1 + 27539 0.68 0.929543
Target:  5'- aCCUGgAGGACCAucuccaccuGUAGGACCuGaUGGn -3'
miRNA:   3'- -GGGCaUCCUGGU---------CGUCCUGGuCaACC- -5'
31657 3' -55.5 NC_006883.1 + 27584 0.7 0.889284
Target:  5'- aCCUGgAGGACCuGCuGGACCuGUgccaccaccUGGa -3'
miRNA:   3'- -GGGCaUCCUGGuCGuCCUGGuCA---------ACC- -5'
31657 3' -55.5 NC_006883.1 + 27656 0.68 0.939078
Target:  5'- aCCUGgAGGACCuGCuGGACC---UGGa -3'
miRNA:   3'- -GGGCaUCCUGGuCGuCCUGGucaACC- -5'
31657 3' -55.5 NC_006883.1 + 27728 0.82 0.281782
Target:  5'- uCCUGUGGGACCuGUcGGACCAGUaGGa -3'
miRNA:   3'- -GGGCAUCCUGGuCGuCCUGGUCAaCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.