miRNA display CGI


Results 1 - 20 of 61 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31657 3' -55.5 NC_006883.1 + 223091 0.81 0.328979
Target:  5'- aCCCGUuccaccACCAGCAGGACCAGgaGGa -3'
miRNA:   3'- -GGGCAucc---UGGUCGUCCUGGUCaaCC- -5'
31657 3' -55.5 NC_006883.1 + 223061 0.69 0.907838
Target:  5'- aCCUGgAGGACCAaCAGGACCAc---- -3'
miRNA:   3'- -GGGCaUCCUGGUcGUCCUGGUcaacc -5'
31657 3' -55.5 NC_006883.1 + 223031 0.81 0.321892
Target:  5'- aCCaGUAGGACCAGgauuuccaaCAGGACCAGUUGc -3'
miRNA:   3'- gGG-CAUCCUGGUC---------GUCCUGGUCAACc -5'
31657 3' -55.5 NC_006883.1 + 222995 0.71 0.814624
Target:  5'- aCC--AGGcgaACCAGCAGGACCAGgugaaccuugUGGa -3'
miRNA:   3'- gGGcaUCC---UGGUCGUCCUGGUCa---------ACC- -5'
31657 3' -55.5 NC_006883.1 + 222950 0.81 0.350923
Target:  5'- aCCaGcAGGACCAGCAGGACCAGgaGa -3'
miRNA:   3'- gGG-CaUCCUGGUCGUCCUGGUCaaCc -5'
31657 3' -55.5 NC_006883.1 + 222923 0.91 0.08564
Target:  5'- aCCaGUAGGACCAGCAGGACCAGUa-- -3'
miRNA:   3'- gGG-CAUCCUGGUCGUCCUGGUCAacc -5'
31657 3' -55.5 NC_006883.1 + 210952 0.66 0.973602
Target:  5'- gUCUGgauGACCAGaaucuacaaguGGACCAGUUGGc -3'
miRNA:   3'- -GGGCaucCUGGUCgu---------CCUGGUCAACC- -5'
31657 3' -55.5 NC_006883.1 + 87665 0.69 0.910166
Target:  5'- aCCCGUugcuGGAUCauauguuguagcauuAGUAGGAguuccaacaacuCCAGUUGGg -3'
miRNA:   3'- -GGGCAu---CCUGG---------------UCGUCCU------------GGUCAACC- -5'
31657 3' -55.5 NC_006883.1 + 81989 0.69 0.924446
Target:  5'- aUCCGUAGGcAUgAGCAGcACCAGUa-- -3'
miRNA:   3'- -GGGCAUCC-UGgUCGUCcUGGUCAacc -5'
31657 3' -55.5 NC_006883.1 + 28534 0.83 0.269322
Target:  5'- aCCUGaAGGACCuGUuGGACCAGUUGGa -3'
miRNA:   3'- -GGGCaUCCUGGuCGuCCUGGUCAACC- -5'
31657 3' -55.5 NC_006883.1 + 28507 0.71 0.838916
Target:  5'- aCCaGUcGGACCAGUuccaccuGGACCAGgaGGa -3'
miRNA:   3'- gGG-CAuCCUGGUCGu------CCUGGUCaaCC- -5'
31657 3' -55.5 NC_006883.1 + 28411 0.66 0.97881
Target:  5'- aCCUGgAGGACCuGgAGGACCAc---- -3'
miRNA:   3'- -GGGCaUCCUGGuCgUCCUGGUcaacc -5'
31657 3' -55.5 NC_006883.1 + 28357 0.91 0.092437
Target:  5'- uCCUGgAGGACCAGCAGGACCAGUuccgccUGGa -3'
miRNA:   3'- -GGGCaUCCUGGUCGUCCUGGUCA------ACC- -5'
31657 3' -55.5 NC_006883.1 + 28315 0.85 0.203722
Target:  5'- aCCUGgAGGACCaucaucaccAGUAGGACCAGUUGGa -3'
miRNA:   3'- -GGGCaUCCUGG---------UCGUCCUGGUCAACC- -5'
31657 3' -55.5 NC_006883.1 + 28274 0.7 0.868859
Target:  5'- uUCCGccuGGACCAGUuGGACCuGgaGGa -3'
miRNA:   3'- -GGGCau-CCUGGUCGuCCUGGuCaaCC- -5'
31657 3' -55.5 NC_006883.1 + 28237 0.95 0.047311
Target:  5'- aCCaGUAGGACCAGCAGGACCAGUcGGa -3'
miRNA:   3'- gGG-CAUCCUGGUCGUCCUGGUCAaCC- -5'
31657 3' -55.5 NC_006883.1 + 28184 0.9 0.09725
Target:  5'- uUCCGUcAGcACCAGCAGGACCAGUUGGa -3'
miRNA:   3'- -GGGCA-UCcUGGUCGUCCUGGUCAACC- -5'
31657 3' -55.5 NC_006883.1 + 28147 0.88 0.138126
Target:  5'- aCCUGaAGGACCAGUuGGACCAGUUGGn -3'
miRNA:   3'- -GGGCaUCCUGGUCGuCCUGGUCAACC- -5'
31657 3' -55.5 NC_006883.1 + 28120 0.91 0.090117
Target:  5'- aCCUGUAGGuCCuGUAGGACCAGUUGGa -3'
miRNA:   3'- -GGGCAUCCuGGuCGUCCUGGUCAACC- -5'
31657 3' -55.5 NC_006883.1 + 28093 0.78 0.457418
Target:  5'- aCCUGgAGGACCAGCAGGACCu----- -3'
miRNA:   3'- -GGGCaUCCUGGUCGUCCUGGucaacc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.