miRNA display CGI


Results 21 - 40 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31657 3' -55.5 NC_006883.1 + 26542 0.75 0.608208
Target:  5'- aCCUGUAGGACCuGCuGGACCAu---- -3'
miRNA:   3'- -GGGCAUCCUGGuCGuCCUGGUcaacc -5'
31657 3' -55.5 NC_006883.1 + 22244 0.76 0.598421
Target:  5'- aUCCaGcAGGACCAGgAGGACCAcUUGGa -3'
miRNA:   3'- -GGG-CaUCCUGGUCgUCCUGGUcAACC- -5'
31657 3' -55.5 NC_006883.1 + 23185 0.76 0.559564
Target:  5'- aCCaucAGGACCAGCAGGuCCAGUUa- -3'
miRNA:   3'- gGGca-UCCUGGUCGUCCuGGUCAAcc -5'
31657 3' -55.5 NC_006883.1 + 23332 0.76 0.559564
Target:  5'- aCCUGgAGaACCAGCAGGACCuugaggaccAGUUGGa -3'
miRNA:   3'- -GGGCaUCcUGGUCGUCCUGG---------UCAACC- -5'
31657 3' -55.5 NC_006883.1 + 23716 0.77 0.502759
Target:  5'- aCCUGgAGGACCuGCuGGACCAGaUGGn -3'
miRNA:   3'- -GGGCaUCCUGGuCGuCCUGGUCaACC- -5'
31657 3' -55.5 NC_006883.1 + 28093 0.78 0.457418
Target:  5'- aCCUGgAGGACCAGCAGGACCu----- -3'
miRNA:   3'- -GGGCaUCCUGGUCGUCCUGGucaacc -5'
31657 3' -55.5 NC_006883.1 + 23269 0.79 0.431287
Target:  5'- aCC--AGGAgcaccaucaucaCCAGCAGGACCAGUUGGn -3'
miRNA:   3'- gGGcaUCCU------------GGUCGUCCUGGUCAACC- -5'
31657 3' -55.5 NC_006883.1 + 23365 0.79 0.422773
Target:  5'- aCCUGgauuugaAGGACCuaCAGGACCAGUUGGa -3'
miRNA:   3'- -GGGCa------UCCUGGucGUCCUGGUCAACC- -5'
31657 3' -55.5 NC_006883.1 + 21770 0.79 0.414361
Target:  5'- aCCUGgAGGACCAGaAGGACCAGUUa- -3'
miRNA:   3'- -GGGCaUCCUGGUCgUCCUGGUCAAcc -5'
31657 3' -55.5 NC_006883.1 + 21967 0.8 0.401117
Target:  5'- aCCUGcAGGACCaggagauccaguaccAGgAGGACCAGUUGGa -3'
miRNA:   3'- -GGGCaUCCUGG---------------UCgUCCUGGUCAACC- -5'
31657 3' -55.5 NC_006883.1 + 27755 0.8 0.389752
Target:  5'- aCCaGUuGGACCuGUGGGACCAGUUGGn -3'
miRNA:   3'- gGG-CAuCCUGGuCGUCCUGGUCAACC- -5'
31657 3' -55.5 NC_006883.1 + 21868 0.8 0.358465
Target:  5'- aCCag-AGGACCAGCAGGuCCAGUaGGa -3'
miRNA:   3'- -GGgcaUCCUGGUCGUCCuGGUCAaCC- -5'
31657 3' -55.5 NC_006883.1 + 222950 0.81 0.350923
Target:  5'- aCCaGcAGGACCAGCAGGACCAGgaGa -3'
miRNA:   3'- gGG-CaUCCUGGUCGUCCUGGUCaaCc -5'
31657 3' -55.5 NC_006883.1 + 23419 0.81 0.350923
Target:  5'- aCCUGUAGGACCAuCuGGuCCAGUUGGn -3'
miRNA:   3'- -GGGCAUCCUGGUcGuCCuGGUCAACC- -5'
31657 3' -55.5 NC_006883.1 + 26668 0.81 0.343494
Target:  5'- aCCUGgAGGACCGuCuGGACCAGUUGGa -3'
miRNA:   3'- -GGGCaUCCUGGUcGuCCUGGUCAACC- -5'
31657 3' -55.5 NC_006883.1 + 27503 0.81 0.343494
Target:  5'- aCCUGUAGGACCuGCuGGACCuGUaGGa -3'
miRNA:   3'- -GGGCAUCCUGGuCGuCCUGGuCAaCC- -5'
31657 3' -55.5 NC_006883.1 + 223091 0.81 0.328979
Target:  5'- aCCCGUuccaccACCAGCAGGACCAGgaGGa -3'
miRNA:   3'- -GGGCAucc---UGGUCGUCCUGGUCaaCC- -5'
31657 3' -55.5 NC_006883.1 + 223031 0.81 0.321892
Target:  5'- aCCaGUAGGACCAGgauuuccaaCAGGACCAGUUGc -3'
miRNA:   3'- gGG-CAUCCUGGUC---------GUCCUGGUCAACc -5'
31657 3' -55.5 NC_006883.1 + 21815 0.82 0.308065
Target:  5'- aCCUugAGGGCCAGCAGGACCAGg--- -3'
miRNA:   3'- -GGGcaUCCUGGUCGUCCUGGUCaacc -5'
31657 3' -55.5 NC_006883.1 + 27728 0.82 0.281782
Target:  5'- uCCUGUGGGACCuGUcGGACCAGUaGGa -3'
miRNA:   3'- -GGGCAUCCUGGuCGuCCUGGUCAaCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.