miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31657 5' -57.2 NC_006883.1 + 21987 1.09 0.003758
Target:  5'- cCUCCACUUGGACCAGGAGGACCUGCAg -3'
miRNA:   3'- -GAGGUGAACCUGGUCCUCCUGGACGU- -5'
31657 5' -57.2 NC_006883.1 + 22087 0.95 0.029418
Target:  5'- -aCCACUUGGACCAGGAGGACCUGgAg -3'
miRNA:   3'- gaGGUGAACCUGGUCCUCCUGGACgU- -5'
31657 5' -57.2 NC_006883.1 + 25022 0.89 0.075605
Target:  5'- cCUCCugUUGGACCuGGAGGACCUGgAg -3'
miRNA:   3'- -GAGGugAACCUGGuCCUCCUGGACgU- -5'
31657 5' -57.2 NC_006883.1 + 21744 0.84 0.142714
Target:  5'- uUCCAgUUGGACCuGGAGGACCaGCAg -3'
miRNA:   3'- gAGGUgAACCUGGuCCUCCUGGaCGU- -5'
31657 5' -57.2 NC_006883.1 + 28493 0.84 0.153734
Target:  5'- uUCCACcUGGACCAGGAGGACCa--- -3'
miRNA:   3'- gAGGUGaACCUGGUCCUCCUGGacgu -5'
31657 5' -57.2 NC_006883.1 + 28334 0.84 0.161503
Target:  5'- uUCCGCcUGGACCuGGAGGACCUGgAg -3'
miRNA:   3'- gAGGUGaACCUGGuCCUCCUGGACgU- -5'
31657 5' -57.2 NC_006883.1 + 22225 0.83 0.178109
Target:  5'- -aCCACUUGGACCAucuggaccuGGAGGACCaGCAg -3'
miRNA:   3'- gaGGUGAACCUGGU---------CCUCCUGGaCGU- -5'
31657 5' -57.2 NC_006883.1 + 223086 0.82 0.205857
Target:  5'- uUCCACcaccagcaGGACCAGGAGGACCUGgAg -3'
miRNA:   3'- gAGGUGaa------CCUGGUCCUCCUGGACgU- -5'
31657 5' -57.2 NC_006883.1 + 28102 0.81 0.221088
Target:  5'- -aCCAgUUGGACCuGGAGGACCaGCAg -3'
miRNA:   3'- gaGGUgAACCUGGuCCUCCUGGaCGU- -5'
31657 5' -57.2 NC_006883.1 + 27594 0.79 0.305162
Target:  5'- uUCCAggaGGACCuGGAGGACCUGCu -3'
miRNA:   3'- gAGGUgaaCCUGGuCCUCCUGGACGu -5'
31657 5' -57.2 NC_006883.1 + 23724 0.79 0.305162
Target:  5'- -cCUGC-UGGACCuGGAGGACCUGCu -3'
miRNA:   3'- gaGGUGaACCUGGuCCUCCUGGACGu -5'
31657 5' -57.2 NC_006883.1 + 27666 0.79 0.305162
Target:  5'- uUCCAggaGGACCuGGAGGACCUGCu -3'
miRNA:   3'- gAGGUgaaCCUGGuCCUCCUGGACGu -5'
31657 5' -57.2 NC_006883.1 + 28138 0.79 0.319
Target:  5'- -aCCAgUUGGACCAGuuGGACCUGUAg -3'
miRNA:   3'- gaGGUgAACCUGGUCcuCCUGGACGU- -5'
31657 5' -57.2 NC_006883.1 + 24975 0.79 0.319
Target:  5'- -aCCACUUGGACCugauGGAccacuuGGACCUGUAg -3'
miRNA:   3'- gaGGUGAACCUGGu---CCU------CCUGGACGU- -5'
31657 5' -57.2 NC_006883.1 + 23934 0.79 0.319
Target:  5'- -aCCAgUUGGACCAGuuGGACCUGUAg -3'
miRNA:   3'- gaGGUgAACCUGGUCcuCCUGGACGU- -5'
31657 5' -57.2 NC_006883.1 + 23698 0.78 0.333305
Target:  5'- -aCCAgaUGGACCuGGAGGACCaGCAg -3'
miRNA:   3'- gaGGUgaACCUGGuCCUCCUGGaCGU- -5'
31657 5' -57.2 NC_006883.1 + 23194 0.77 0.363304
Target:  5'- -aCCACUUGGACCAucAGGACCaGCAg -3'
miRNA:   3'- gaGGUGAACCUGGUccUCCUGGaCGU- -5'
31657 5' -57.2 NC_006883.1 + 23242 0.77 0.37109
Target:  5'- -aCCAgUUGGACCuGGAGGACCaccaGCAg -3'
miRNA:   3'- gaGGUgAACCUGGuCCUCCUGGa---CGU- -5'
31657 5' -57.2 NC_006883.1 + 26724 0.77 0.387002
Target:  5'- gCUCCAUcauuuCCAGGAGGACCUGCu -3'
miRNA:   3'- -GAGGUGaaccuGGUCCUCCUGGACGu -5'
31657 5' -57.2 NC_006883.1 + 26571 0.77 0.387002
Target:  5'- gCUCCAUcauuuCCAGGAGGACCUGCu -3'
miRNA:   3'- -GAGGUGaaccuGGUCCUCCUGGACGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.