miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31657 5' -57.2 NC_006883.1 + 21744 0.84 0.142714
Target:  5'- uUCCAgUUGGACCuGGAGGACCaGCAg -3'
miRNA:   3'- gAGGUgAACCUGGuCCUCCUGGaCGU- -5'
31657 5' -57.2 NC_006883.1 + 21788 0.76 0.454939
Target:  5'- -gCCACcUGGACCAGaAGGACCUGgAg -3'
miRNA:   3'- gaGGUGaACCUGGUCcUCCUGGACgU- -5'
31657 5' -57.2 NC_006883.1 + 21833 0.67 0.902529
Target:  5'- -aCCACUcGGACCAacaucaccuuGAGGGCCaGCAg -3'
miRNA:   3'- gaGGUGAaCCUGGUc---------CUCCUGGaCGU- -5'
31657 5' -57.2 NC_006883.1 + 21880 0.68 0.847035
Target:  5'- -aCCACcagcaGGACCA-GAGGACCaGCAg -3'
miRNA:   3'- gaGGUGaa---CCUGGUcCUCCUGGaCGU- -5'
31657 5' -57.2 NC_006883.1 + 21925 0.67 0.883254
Target:  5'- -aCCugUUGGACCAGcaucaccuuGcGGACCUuGCGg -3'
miRNA:   3'- gaGGugAACCUGGUC---------CuCCUGGA-CGU- -5'
31657 5' -57.2 NC_006883.1 + 21987 1.09 0.003758
Target:  5'- cCUCCACUUGGACCAGGAGGACCUGCAg -3'
miRNA:   3'- -GAGGUGAACCUGGUCCUCCUGGACGU- -5'
31657 5' -57.2 NC_006883.1 + 22060 0.71 0.705079
Target:  5'- -aCCACcagcaGGACCAGuuGGACCUGUAg -3'
miRNA:   3'- gaGGUGaa---CCUGGUCcuCCUGGACGU- -5'
31657 5' -57.2 NC_006883.1 + 22087 0.95 0.029418
Target:  5'- -aCCACUUGGACCAGGAGGACCUGgAg -3'
miRNA:   3'- gaGGUGAACCUGGUCCUCCUGGACgU- -5'
31657 5' -57.2 NC_006883.1 + 22132 0.76 0.42869
Target:  5'- -aCCACUUGGACCAGcAGGACCa--- -3'
miRNA:   3'- gaGGUGAACCUGGUCcUCCUGGacgu -5'
31657 5' -57.2 NC_006883.1 + 22159 0.75 0.472913
Target:  5'- -aCCACUaGGACCuGGAGGACCagGUg -3'
miRNA:   3'- gaGGUGAaCCUGGuCCUCCUGGa-CGu -5'
31657 5' -57.2 NC_006883.1 + 22180 0.71 0.705079
Target:  5'- -aCCACUaGGACCuGGAGGACCn--- -3'
miRNA:   3'- gaGGUGAaCCUGGuCCUCCUGGacgu -5'
31657 5' -57.2 NC_006883.1 + 22225 0.83 0.178109
Target:  5'- -aCCACUUGGACCAucuggaccuGGAGGACCaGCAg -3'
miRNA:   3'- gaGGUGAACCUGGU---------CCUCCUGGaCGU- -5'
31657 5' -57.2 NC_006883.1 + 23140 0.69 0.797656
Target:  5'- -aCCAgUUGGACCuGGAGcACCUGgAu -3'
miRNA:   3'- gaGGUgAACCUGGuCCUCcUGGACgU- -5'
31657 5' -57.2 NC_006883.1 + 23194 0.77 0.363304
Target:  5'- -aCCACUUGGACCAucAGGACCaGCAg -3'
miRNA:   3'- gaGGUGAACCUGGUccUCCUGGaCGU- -5'
31657 5' -57.2 NC_006883.1 + 23215 0.66 0.919846
Target:  5'- -------aGGACCAGGAGGACCa--- -3'
miRNA:   3'- gaggugaaCCUGGUCCUCCUGGacgu -5'
31657 5' -57.2 NC_006883.1 + 23242 0.77 0.37109
Target:  5'- -aCCAgUUGGACCuGGAGGACCaccaGCAg -3'
miRNA:   3'- gaGGUgAACCUGGuCCUCCUGGa---CGU- -5'
31657 5' -57.2 NC_006883.1 + 23305 0.71 0.705079
Target:  5'- -aCCAgUUGGACCAccgauaccuGGAGGACCUugaggaccaggaGCAc -3'
miRNA:   3'- gaGGUgAACCUGGU---------CCUCCUGGA------------CGU- -5'
31657 5' -57.2 NC_006883.1 + 23341 0.69 0.788894
Target:  5'- -aCCAgUUGGACCuGGAGaACCaGCAg -3'
miRNA:   3'- gaGGUgAACCUGGuCCUCcUGGaCGU- -5'
31657 5' -57.2 NC_006883.1 + 23374 0.66 0.914295
Target:  5'- -aCCAgUUGGACCuGGAuuugaaGGACCUaCAg -3'
miRNA:   3'- gaGGUgAACCUGGuCCU------CCUGGAcGU- -5'
31657 5' -57.2 NC_006883.1 + 23402 0.76 0.454939
Target:  5'- gUCCAgUUGGACCuGuGGGACCUGUg -3'
miRNA:   3'- gAGGUgAACCUGGuCcUCCUGGACGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.