miRNA display CGI


Results 21 - 40 of 55 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31657 5' -57.2 NC_006883.1 + 23444 0.75 0.491238
Target:  5'- uUCCugUauuaccUGGACCuGGuGGACCUGUAg -3'
miRNA:   3'- gAGGugA------ACCUGGuCCuCCUGGACGU- -5'
31657 5' -57.2 NC_006883.1 + 23698 0.78 0.333305
Target:  5'- -aCCAgaUGGACCuGGAGGACCaGCAg -3'
miRNA:   3'- gaGGUgaACCUGGuCCUCCUGGaCGU- -5'
31657 5' -57.2 NC_006883.1 + 23724 0.79 0.305162
Target:  5'- -cCUGC-UGGACCuGGAGGACCUGCu -3'
miRNA:   3'- gaGGUGaACCUGGuCCUCCUGGACGu -5'
31657 5' -57.2 NC_006883.1 + 23934 0.79 0.319
Target:  5'- -aCCAgUUGGACCAGuuGGACCUGUAg -3'
miRNA:   3'- gaGGUgAACCUGGUCcuCCUGGACGU- -5'
31657 5' -57.2 NC_006883.1 + 24975 0.79 0.319
Target:  5'- -aCCACUUGGACCugauGGAccacuuGGACCUGUAg -3'
miRNA:   3'- gaGGUGAACCUGGu---CCU------CCUGGACGU- -5'
31657 5' -57.2 NC_006883.1 + 25022 0.89 0.075605
Target:  5'- cCUCCugUUGGACCuGGAGGACCUGgAg -3'
miRNA:   3'- -GAGGugAACCUGGuCCUCCUGGACgU- -5'
31657 5' -57.2 NC_006883.1 + 26571 0.77 0.387002
Target:  5'- gCUCCAUcauuuCCAGGAGGACCUGCu -3'
miRNA:   3'- -GAGGUGaaccuGGUCCUCCUGGACGu -5'
31657 5' -57.2 NC_006883.1 + 26636 0.69 0.823074
Target:  5'- uUCCACcugugGGACCAGcAGGACCaguuggaccuguUGCAc -3'
miRNA:   3'- gAGGUGaa---CCUGGUCcUCCUGG------------ACGU- -5'
31657 5' -57.2 NC_006883.1 + 26677 0.74 0.538387
Target:  5'- -aCCACcUGGACCuGGAGGACCg--- -3'
miRNA:   3'- gaGGUGaACCUGGuCCUCCUGGacgu -5'
31657 5' -57.2 NC_006883.1 + 26724 0.77 0.387002
Target:  5'- gCUCCAUcauuuCCAGGAGGACCUGCu -3'
miRNA:   3'- -GAGGUGaaccuGGUCCUCCUGGACGu -5'
31657 5' -57.2 NC_006883.1 + 26776 0.68 0.869357
Target:  5'- -aCCAgUUGGACCuGcAGGACCaguUGCAc -3'
miRNA:   3'- gaGGUgAACCUGGuCcUCCUGG---ACGU- -5'
31657 5' -57.2 NC_006883.1 + 26803 0.75 0.500523
Target:  5'- -aCCAgUUGGACCuGGuGGACCaGCAg -3'
miRNA:   3'- gaGGUgAACCUGGuCCuCCUGGaCGU- -5'
31657 5' -57.2 NC_006883.1 + 27485 0.71 0.705079
Target:  5'- -aCCugUaGGACCAGGAGcACCUuGCGg -3'
miRNA:   3'- gaGGugAaCCUGGUCCUCcUGGA-CGU- -5'
31657 5' -57.2 NC_006883.1 + 27526 0.7 0.761847
Target:  5'- uCUCCACcuguaGGACCugauGGAccuguaGGACCUGCu -3'
miRNA:   3'- -GAGGUGaa---CCUGGu---CCU------CCUGGACGu -5'
31657 5' -57.2 NC_006883.1 + 27548 0.74 0.538387
Target:  5'- -aCCACcUGGACCuGGAGGACCa--- -3'
miRNA:   3'- gaGGUGaACCUGGuCCUCCUGGacgu -5'
31657 5' -57.2 NC_006883.1 + 27594 0.79 0.305162
Target:  5'- uUCCAggaGGACCuGGAGGACCUGCu -3'
miRNA:   3'- gAGGUgaaCCUGGuCCUCCUGGACGu -5'
31657 5' -57.2 NC_006883.1 + 27666 0.79 0.305162
Target:  5'- uUCCAggaGGACCuGGAGGACCUGCu -3'
miRNA:   3'- gAGGUgaaCCUGGuCCUCCUGGACGu -5'
31657 5' -57.2 NC_006883.1 + 27719 0.7 0.752605
Target:  5'- -aCCugUcGGACCAGuAGGACCUGa- -3'
miRNA:   3'- gaGGugAaCCUGGUCcUCCUGGACgu -5'
31657 5' -57.2 NC_006883.1 + 27766 0.72 0.665969
Target:  5'- gCUCCAgcaGGACCAGuuGGACCUGUg -3'
miRNA:   3'- -GAGGUgaaCCUGGUCcuCCUGGACGu -5'
31657 5' -57.2 NC_006883.1 + 28102 0.81 0.221088
Target:  5'- -aCCAgUUGGACCuGGAGGACCaGCAg -3'
miRNA:   3'- gaGGUgAACCUGGuCCUCCUGGaCGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.