Results 1 - 20 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31657 | 5' | -57.2 | NC_006883.1 | + | 231981 | 0.66 | 0.93982 |
Target: 5'- gUCCAgUUGGAguuggaaCAGGAuuuGGACCUGg- -3' miRNA: 3'- gAGGUgAACCUg------GUCCU---CCUGGACgu -5' |
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31657 | 5' | -57.2 | NC_006883.1 | + | 223086 | 0.82 | 0.205857 |
Target: 5'- uUCCACcaccagcaGGACCAGGAGGACCUGgAg -3' miRNA: 3'- gAGGUGaa------CCUGGUCCUCCUGGACgU- -5' |
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31657 | 5' | -57.2 | NC_006883.1 | + | 223031 | 0.67 | 0.889891 |
Target: 5'- -aCCAgUaGGACCAGGAuuuccaacaGGACCaguUGCAc -3' miRNA: 3'- gaGGUgAaCCUGGUCCU---------CCUGG---ACGU- -5' |
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31657 | 5' | -57.2 | NC_006883.1 | + | 222954 | 0.67 | 0.909109 |
Target: 5'- uUCCACcagcaggaccagcaGGACCAGGAgaaccaguaGGACCaGCAg -3' miRNA: 3'- gAGGUGaa------------CCUGGUCCU---------CCUGGaCGU- -5' |
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31657 | 5' | -57.2 | NC_006883.1 | + | 222790 | 0.68 | 0.869357 |
Target: 5'- gUCCugUUGGuccuCCAGGuccuccuGGuCCUGCu -3' miRNA: 3'- gAGGugAACCu---GGUCCu------CCuGGACGu -5' |
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31657 | 5' | -57.2 | NC_006883.1 | + | 184514 | 0.7 | 0.752605 |
Target: 5'- aUCaugguCUUGaACCAGGAGGACCUGa- -3' miRNA: 3'- gAGgu---GAACcUGGUCCUCCUGGACgu -5' |
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31657 | 5' | -57.2 | NC_006883.1 | + | 155761 | 0.66 | 0.93982 |
Target: 5'- uUCC-CUUGGA---GGAGGACaCUGCu -3' miRNA: 3'- gAGGuGAACCUgguCCUCCUG-GACGu -5' |
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31657 | 5' | -57.2 | NC_006883.1 | + | 28562 | 0.7 | 0.761847 |
Target: 5'- uUCCuggUGGACCuGGAGGACCa--- -3' miRNA: 3'- gAGGugaACCUGGuCCUCCUGGacgu -5' |
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31657 | 5' | -57.2 | NC_006883.1 | + | 28525 | 0.7 | 0.779999 |
Target: 5'- -aCCugUUGGACCAGuuGGACCaGUc -3' miRNA: 3'- gaGGugAACCUGGUCcuCCUGGaCGu -5' |
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31657 | 5' | -57.2 | NC_006883.1 | + | 28493 | 0.84 | 0.153734 |
Target: 5'- uUCCACcUGGACCAGGAGGACCa--- -3' miRNA: 3'- gAGGUGaACCUGGUCCUCCUGGacgu -5' |
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31657 | 5' | -57.2 | NC_006883.1 | + | 28470 | 0.72 | 0.665969 |
Target: 5'- uCUCCACcaguaGGACCuGGAGGuCCUGgAg -3' miRNA: 3'- -GAGGUGaa---CCUGGuCCUCCuGGACgU- -5' |
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31657 | 5' | -57.2 | NC_006883.1 | + | 28334 | 0.84 | 0.161503 |
Target: 5'- uUCCGCcUGGACCuGGAGGACCUGgAg -3' miRNA: 3'- gAGGUGaACCUGGuCCUCCUGGACgU- -5' |
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31657 | 5' | -57.2 | NC_006883.1 | + | 28274 | 0.76 | 0.420141 |
Target: 5'- uUCCGCcUGGACCAGuuGGACCUGgAg -3' miRNA: 3'- gAGGUGaACCUGGUCcuCCUGGACgU- -5' |
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31657 | 5' | -57.2 | NC_006883.1 | + | 28242 | 0.68 | 0.862109 |
Target: 5'- uCUCCACcaguaGGACCAGcAGGACCaGUc -3' miRNA: 3'- -GAGGUGaa---CCUGGUCcUCCUGGaCGu -5' |
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31657 | 5' | -57.2 | NC_006883.1 | + | 28138 | 0.79 | 0.319 |
Target: 5'- -aCCAgUUGGACCAGuuGGACCUGUAg -3' miRNA: 3'- gaGGUgAACCUGGUCcuCCUGGACGU- -5' |
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31657 | 5' | -57.2 | NC_006883.1 | + | 28102 | 0.81 | 0.221088 |
Target: 5'- -aCCAgUUGGACCuGGAGGACCaGCAg -3' miRNA: 3'- gaGGUgAACCUGGuCCUCCUGGaCGU- -5' |
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31657 | 5' | -57.2 | NC_006883.1 | + | 27766 | 0.72 | 0.665969 |
Target: 5'- gCUCCAgcaGGACCAGuuGGACCUGUg -3' miRNA: 3'- -GAGGUgaaCCUGGUCcuCCUGGACGu -5' |
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31657 | 5' | -57.2 | NC_006883.1 | + | 27719 | 0.7 | 0.752605 |
Target: 5'- -aCCugUcGGACCAGuAGGACCUGa- -3' miRNA: 3'- gaGGugAaCCUGGUCcUCCUGGACgu -5' |
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31657 | 5' | -57.2 | NC_006883.1 | + | 27666 | 0.79 | 0.305162 |
Target: 5'- uUCCAggaGGACCuGGAGGACCUGCu -3' miRNA: 3'- gAGGUgaaCCUGGuCCUCCUGGACGu -5' |
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31657 | 5' | -57.2 | NC_006883.1 | + | 27594 | 0.79 | 0.305162 |
Target: 5'- uUCCAggaGGACCuGGAGGACCUGCu -3' miRNA: 3'- gAGGUgaaCCUGGuCCUCCUGGACGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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