miRNA display CGI


Results 21 - 40 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31657 5' -57.2 NC_006883.1 + 27485 0.71 0.705079
Target:  5'- -aCCugUaGGACCAGGAGcACCUuGCGg -3'
miRNA:   3'- gaGGugAaCCUGGUCCUCcUGGA-CGU- -5'
31657 5' -57.2 NC_006883.1 + 23305 0.71 0.705079
Target:  5'- -aCCAgUUGGACCAccgauaccuGGAGGACCUugaggaccaggaGCAc -3'
miRNA:   3'- gaGGUgAACCUGGU---------CCUCCUGGA------------CGU- -5'
31657 5' -57.2 NC_006883.1 + 22180 0.71 0.705079
Target:  5'- -aCCACUaGGACCuGGAGGACCn--- -3'
miRNA:   3'- gaGGUGAaCCUGGuCCUCCUGGacgu -5'
31657 5' -57.2 NC_006883.1 + 22060 0.71 0.705079
Target:  5'- -aCCACcagcaGGACCAGuuGGACCUGUAg -3'
miRNA:   3'- gaGGUGaa---CCUGGUCcuCCUGGACGU- -5'
31657 5' -57.2 NC_006883.1 + 27766 0.72 0.665969
Target:  5'- gCUCCAgcaGGACCAGuuGGACCUGUg -3'
miRNA:   3'- -GAGGUgaaCCUGGUCcuCCUGGACGu -5'
31657 5' -57.2 NC_006883.1 + 28470 0.72 0.665969
Target:  5'- uCUCCACcaguaGGACCuGGAGGuCCUGgAg -3'
miRNA:   3'- -GAGGUGaa---CCUGGuCCUCCuGGACgU- -5'
31657 5' -57.2 NC_006883.1 + 26677 0.74 0.538387
Target:  5'- -aCCACcUGGACCuGGAGGACCg--- -3'
miRNA:   3'- gaGGUGaACCUGGuCCUCCUGGacgu -5'
31657 5' -57.2 NC_006883.1 + 27548 0.74 0.538387
Target:  5'- -aCCACcUGGACCuGGAGGACCa--- -3'
miRNA:   3'- gaGGUGaACCUGGuCCUCCUGGacgu -5'
31657 5' -57.2 NC_006883.1 + 26803 0.75 0.500523
Target:  5'- -aCCAgUUGGACCuGGuGGACCaGCAg -3'
miRNA:   3'- gaGGUgAACCUGGuCCuCCUGGaCGU- -5'
31657 5' -57.2 NC_006883.1 + 23444 0.75 0.491238
Target:  5'- uUCCugUauuaccUGGACCuGGuGGACCUGUAg -3'
miRNA:   3'- gAGGugA------ACCUGGuCCuCCUGGACGU- -5'
31657 5' -57.2 NC_006883.1 + 22159 0.75 0.472913
Target:  5'- -aCCACUaGGACCuGGAGGACCagGUg -3'
miRNA:   3'- gaGGUGAaCCUGGuCCUCCUGGa-CGu -5'
31657 5' -57.2 NC_006883.1 + 21788 0.76 0.454939
Target:  5'- -gCCACcUGGACCAGaAGGACCUGgAg -3'
miRNA:   3'- gaGGUGaACCUGGUCcUCCUGGACgU- -5'
31657 5' -57.2 NC_006883.1 + 23402 0.76 0.454939
Target:  5'- gUCCAgUUGGACCuGuGGGACCUGUg -3'
miRNA:   3'- gAGGUgAACCUGGuCcUCCUGGACGu -5'
31657 5' -57.2 NC_006883.1 + 22132 0.76 0.42869
Target:  5'- -aCCACUUGGACCAGcAGGACCa--- -3'
miRNA:   3'- gaGGUGAACCUGGUCcUCCUGGacgu -5'
31657 5' -57.2 NC_006883.1 + 28274 0.76 0.420141
Target:  5'- uUCCGCcUGGACCAGuuGGACCUGgAg -3'
miRNA:   3'- gAGGUGaACCUGGUCcuCCUGGACgU- -5'
31657 5' -57.2 NC_006883.1 + 26571 0.77 0.387002
Target:  5'- gCUCCAUcauuuCCAGGAGGACCUGCu -3'
miRNA:   3'- -GAGGUGaaccuGGUCCUCCUGGACGu -5'
31657 5' -57.2 NC_006883.1 + 26724 0.77 0.387002
Target:  5'- gCUCCAUcauuuCCAGGAGGACCUGCu -3'
miRNA:   3'- -GAGGUGaaccuGGUCCUCCUGGACGu -5'
31657 5' -57.2 NC_006883.1 + 23242 0.77 0.37109
Target:  5'- -aCCAgUUGGACCuGGAGGACCaccaGCAg -3'
miRNA:   3'- gaGGUgAACCUGGuCCUCCUGGa---CGU- -5'
31657 5' -57.2 NC_006883.1 + 23194 0.77 0.363304
Target:  5'- -aCCACUUGGACCAucAGGACCaGCAg -3'
miRNA:   3'- gaGGUGAACCUGGUccUCCUGGaCGU- -5'
31657 5' -57.2 NC_006883.1 + 23698 0.78 0.333305
Target:  5'- -aCCAgaUGGACCuGGAGGACCaGCAg -3'
miRNA:   3'- gaGGUgaACCUGGuCCUCCUGGaCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.