miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31658 3' -57.8 NC_006883.1 + 22111 1.13 0.002214
Target:  5'- aUCUCCACCACUCGGACCUGGAGGACCa -3'
miRNA:   3'- -AGAGGUGGUGAGCCUGGACCUCCUGG- -5'
31658 3' -57.8 NC_006883.1 + 26682 0.96 0.028897
Target:  5'- gUUCCACCACcUGGACCUGGAGGACCg -3'
miRNA:   3'- aGAGGUGGUGaGCCUGGACCUCCUGG- -5'
31658 3' -57.8 NC_006883.1 + 22183 0.93 0.044856
Target:  5'- --aCCACCACUaGGACCUGGAGGACCa -3'
miRNA:   3'- agaGGUGGUGAgCCUGGACCUCCUGG- -5'
31658 3' -57.8 NC_006883.1 + 28471 0.87 0.09866
Target:  5'- aUCUCCACCAgUaGGACCUGGAGGuCCu -3'
miRNA:   3'- -AGAGGUGGUgAgCCUGGACCUCCuGG- -5'
31658 3' -57.8 NC_006883.1 + 223087 0.87 0.109279
Target:  5'- gUUCCACCACcagcaggaccaggaGGACCUGGAGGACCa -3'
miRNA:   3'- aGAGGUGGUGag------------CCUGGACCUCCUGG- -5'
31658 3' -57.8 NC_006883.1 + 22161 0.87 0.111749
Target:  5'- ---nCACCACUaGGACCUGGAGGACCa -3'
miRNA:   3'- agagGUGGUGAgCCUGGACCUCCUGG- -5'
31658 3' -57.8 NC_006883.1 + 28275 0.85 0.129596
Target:  5'- gUUCCgccuggACCAgUUGGACCUGGAGGACCa -3'
miRNA:   3'- aGAGG------UGGUgAGCCUGGACCUCCUGG- -5'
31658 3' -57.8 NC_006883.1 + 25023 0.85 0.132816
Target:  5'- --aCCuCCugUUGGACCUGGAGGACCu -3'
miRNA:   3'- agaGGuGGugAGCCUGGACCUCCUGG- -5'
31658 3' -57.8 NC_006883.1 + 28112 0.84 0.150045
Target:  5'- -gUCCuguaggACCAgUUGGACCUGGAGGACCa -3'
miRNA:   3'- agAGG------UGGUgAGCCUGGACCUCCUGG- -5'
31658 3' -57.8 NC_006883.1 + 27553 0.83 0.18186
Target:  5'- cCUggACCACcUGGACCUGGAGGACCa -3'
miRNA:   3'- aGAggUGGUGaGCCUGGACCUCCUGG- -5'
31658 3' -57.8 NC_006883.1 + 28335 0.83 0.18186
Target:  5'- gUUCCGCCuggacCUggaGGACCUGGAGGACCa -3'
miRNA:   3'- aGAGGUGGu----GAg--CCUGGACCUCCUGG- -5'
31658 3' -57.8 NC_006883.1 + 21791 0.83 0.189797
Target:  5'- --aCCGCCACcuggaccagaaGGACCUGGAGGACCa -3'
miRNA:   3'- agaGGUGGUGag---------CCUGGACCUCCUGG- -5'
31658 3' -57.8 NC_006883.1 + 21988 0.82 0.199911
Target:  5'- --aCCuCCACUUGGACCaGGAGGACCu -3'
miRNA:   3'- agaGGuGGUGAGCCUGGaCCUCCUGG- -5'
31658 3' -57.8 NC_006883.1 + 23243 0.82 0.199911
Target:  5'- ----gACCAgUUGGACCUGGAGGACCa -3'
miRNA:   3'- agaggUGGUgAGCCUGGACCUCCUGG- -5'
31658 3' -57.8 NC_006883.1 + 28431 0.82 0.22413
Target:  5'- cCUCCAUCAgaaccaucagaacCUggaGGACCUGGAGGACCa -3'
miRNA:   3'- aGAGGUGGU-------------GAg--CCUGGACCUCCUGG- -5'
31658 3' -57.8 NC_006883.1 + 21752 0.81 0.235252
Target:  5'- --aCCAguuauuCCAgUUGGACCUGGAGGACCa -3'
miRNA:   3'- agaGGU------GGUgAGCCUGGACCUCCUGG- -5'
31658 3' -57.8 NC_006883.1 + 27527 0.81 0.246271
Target:  5'- aUCUCCACCugUaggaccugaUGGACCUGuAGGACCu -3'
miRNA:   3'- -AGAGGUGGugA---------GCCUGGACcUCCUGG- -5'
31658 3' -57.8 NC_006883.1 + 22222 0.8 0.263598
Target:  5'- aCUUgGaCCAUcUGGACCUGGAGGACCa -3'
miRNA:   3'- aGAGgU-GGUGaGCCUGGACCUCCUGG- -5'
31658 3' -57.8 NC_006883.1 + 23703 0.8 0.269589
Target:  5'- gCUggACCAgaUGGACCUGGAGGACCa -3'
miRNA:   3'- aGAggUGGUgaGCCUGGACCUCCUGG- -5'
31658 3' -57.8 NC_006883.1 + 27674 0.8 0.27569
Target:  5'- --aCCAUCAUUUccaggaGGACCUGGAGGACCu -3'
miRNA:   3'- agaGGUGGUGAG------CCUGGACCUCCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.