miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31658 3' -57.8 NC_006883.1 + 21608 0.67 0.913984
Target:  5'- uUCUCCAUgAauaGGACuaaCUGGAGGAUUa -3'
miRNA:   3'- -AGAGGUGgUgagCCUG---GACCUCCUGG- -5'
31658 3' -57.8 NC_006883.1 + 21752 0.81 0.235252
Target:  5'- --aCCAguuauuCCAgUUGGACCUGGAGGACCa -3'
miRNA:   3'- agaGGU------GGUgAGCCUGGACCUCCUGG- -5'
31658 3' -57.8 NC_006883.1 + 21791 0.83 0.189797
Target:  5'- --aCCGCCACcuggaccagaaGGACCUGGAGGACCa -3'
miRNA:   3'- agaGGUGGUGag---------CCUGGACCUCCUGG- -5'
31658 3' -57.8 NC_006883.1 + 21836 0.79 0.293359
Target:  5'- --aCCACCACUCGGACCaacaucaccuuGAGGGCCa -3'
miRNA:   3'- agaGGUGGUGAGCCUGGac---------CUCCUGG- -5'
31658 3' -57.8 NC_006883.1 + 21910 0.79 0.301198
Target:  5'- --aUCACCuuGCggaccuugCGGACCUGGAGGACCa -3'
miRNA:   3'- agaGGUGG--UGa-------GCCUGGACCUCCUGG- -5'
31658 3' -57.8 NC_006883.1 + 21950 0.69 0.799973
Target:  5'- -aUCCaguaccaggaggACCAgUUGGACCUGuuGGACCa -3'
miRNA:   3'- agAGG------------UGGUgAGCCUGGACcuCCUGG- -5'
31658 3' -57.8 NC_006883.1 + 21988 0.82 0.199911
Target:  5'- --aCCuCCACUUGGACCaGGAGGACCu -3'
miRNA:   3'- agaGGuGGUGAGCCUGGaCCUCCUGG- -5'
31658 3' -57.8 NC_006883.1 + 22049 0.71 0.737693
Target:  5'- ----gACCAgUUGGACCUGuAGGACCg -3'
miRNA:   3'- agaggUGGUgAGCCUGGACcUCCUGG- -5'
31658 3' -57.8 NC_006883.1 + 22084 0.76 0.463806
Target:  5'- aCUUgGaCCAggaGGACCUGGAGGACCa -3'
miRNA:   3'- aGAGgU-GGUgagCCUGGACCUCCUGG- -5'
31658 3' -57.8 NC_006883.1 + 22111 1.13 0.002214
Target:  5'- aUCUCCACCACUCGGACCUGGAGGACCa -3'
miRNA:   3'- -AGAGGUGGUGAGCCUGGACCUCCUGG- -5'
31658 3' -57.8 NC_006883.1 + 22133 0.66 0.924677
Target:  5'- ----aACCACUUGGACCaGcAGGACCn -3'
miRNA:   3'- agaggUGGUGAGCCUGGaCcUCCUGG- -5'
31658 3' -57.8 NC_006883.1 + 22161 0.87 0.111749
Target:  5'- ---nCACCACUaGGACCUGGAGGACCa -3'
miRNA:   3'- agagGUGGUGAgCCUGGACCUCCUGG- -5'
31658 3' -57.8 NC_006883.1 + 22183 0.93 0.044856
Target:  5'- --aCCACCACUaGGACCUGGAGGACCa -3'
miRNA:   3'- agaGGUGGUGAgCCUGGACCUCCUGG- -5'
31658 3' -57.8 NC_006883.1 + 22222 0.8 0.263598
Target:  5'- aCUUgGaCCAUcUGGACCUGGAGGACCa -3'
miRNA:   3'- aGAGgU-GGUGaGCCUGGACCUCCUGG- -5'
31658 3' -57.8 NC_006883.1 + 22244 0.66 0.924677
Target:  5'- -aUCCAgCA---GGACCaGGAGGACCn -3'
miRNA:   3'- agAGGUgGUgagCCUGGaCCUCCUGG- -5'
31658 3' -57.8 NC_006883.1 + 23141 0.7 0.782747
Target:  5'- ----gACCAgUUGGACCUGGAGcACCu -3'
miRNA:   3'- agaggUGGUgAGCCUGGACCUCcUGG- -5'
31658 3' -57.8 NC_006883.1 + 23195 0.67 0.890059
Target:  5'- ----gACCACUUGGACCaucAGGACCa -3'
miRNA:   3'- agaggUGGUGAGCCUGGaccUCCUGG- -5'
31658 3' -57.8 NC_006883.1 + 23223 0.7 0.756016
Target:  5'- ---nCACCAgcaGGACCaGGAGGACCa -3'
miRNA:   3'- agagGUGGUgagCCUGGaCCUCCUGG- -5'
31658 3' -57.8 NC_006883.1 + 23243 0.82 0.199911
Target:  5'- ----gACCAgUUGGACCUGGAGGACCa -3'
miRNA:   3'- agaggUGGUgAGCCUGGACCUCCUGG- -5'
31658 3' -57.8 NC_006883.1 + 23306 0.7 0.791425
Target:  5'- ----gACCAgUUGGACCaccgauaccUGGAGGACCu -3'
miRNA:   3'- agaggUGGUgAGCCUGG---------ACCUCCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.