miRNA display CGI


Results 21 - 40 of 54 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31658 3' -57.8 NC_006883.1 + 23342 0.71 0.737693
Target:  5'- ----gACCAgUUGGACCUGGAGaACCa -3'
miRNA:   3'- agaggUGGUgAGCCUGGACCUCcUGG- -5'
31658 3' -57.8 NC_006883.1 + 23402 0.71 0.690577
Target:  5'- -gUCCaguuggACCugUgGGACCUGuGGGACCa -3'
miRNA:   3'- agAGG------UGGugAgCCUGGACcUCCUGG- -5'
31658 3' -57.8 NC_006883.1 + 23445 0.75 0.481588
Target:  5'- gUUCCugUAUUaccUGGACCUGGuGGACCu -3'
miRNA:   3'- aGAGGugGUGA---GCCUGGACCuCCUGG- -5'
31658 3' -57.8 NC_006883.1 + 23703 0.8 0.269589
Target:  5'- gCUggACCAgaUGGACCUGGAGGACCa -3'
miRNA:   3'- aGAggUGGUgaGCCUGGACCUCCUGG- -5'
31658 3' -57.8 NC_006883.1 + 23746 0.79 0.312578
Target:  5'- --aCCACCACcagaUCcaggaggaccugcuGGACCUGGAGGACCu -3'
miRNA:   3'- agaGGUGGUG----AG--------------CCUGGACCUCCUGG- -5'
31658 3' -57.8 NC_006883.1 + 23926 0.7 0.782747
Target:  5'- ----gACCAgUUGGACCUGuAGGACCu -3'
miRNA:   3'- agaggUGGUgAGCCUGGACcUCCUGG- -5'
31658 3' -57.8 NC_006883.1 + 24958 0.76 0.420925
Target:  5'- ----gACCACUUGGACCUGuAGGACCu -3'
miRNA:   3'- agaggUGGUGAGCCUGGACcUCCUGG- -5'
31658 3' -57.8 NC_006883.1 + 25023 0.85 0.132816
Target:  5'- --aCCuCCugUUGGACCUGGAGGACCu -3'
miRNA:   3'- agaGGuGGugAGCCUGGACCUCCUGG- -5'
31658 3' -57.8 NC_006883.1 + 26571 0.74 0.549966
Target:  5'- gCUCCAUCAUUuccaggaggaccugcUGGACCUGuAGGACCu -3'
miRNA:   3'- aGAGGUGGUGA---------------GCCUGGACcUCCUGG- -5'
31658 3' -57.8 NC_006883.1 + 26637 0.76 0.455044
Target:  5'- gUUCCACCugUgGGACCaGcAGGACCa -3'
miRNA:   3'- aGAGGUGGugAgCCUGGaCcUCCUGG- -5'
31658 3' -57.8 NC_006883.1 + 26682 0.96 0.028897
Target:  5'- gUUCCACCACcUGGACCUGGAGGACCg -3'
miRNA:   3'- aGAGGUGGUGaGCCUGGACCUCCUGG- -5'
31658 3' -57.8 NC_006883.1 + 26724 0.75 0.503352
Target:  5'- gCUCCAUCAUUuccaggaggaccugcUGGACCUGGAGuACCa -3'
miRNA:   3'- aGAGGUGGUGA---------------GCCUGGACCUCcUGG- -5'
31658 3' -57.8 NC_006883.1 + 26777 0.71 0.737693
Target:  5'- ----gACCAgUUGGACCUGcAGGACCa -3'
miRNA:   3'- agaggUGGUgAGCCUGGACcUCCUGG- -5'
31658 3' -57.8 NC_006883.1 + 26804 0.76 0.455044
Target:  5'- ----gACCAgUUGGACCUGGuGGACCa -3'
miRNA:   3'- agaggUGGUgAGCCUGGACCuCCUGG- -5'
31658 3' -57.8 NC_006883.1 + 27527 0.81 0.246271
Target:  5'- aUCUCCACCugUaggaccugaUGGACCUGuAGGACCu -3'
miRNA:   3'- -AGAGGUGGugA---------GCCUGGACcUCCUGG- -5'
31658 3' -57.8 NC_006883.1 + 27553 0.83 0.18186
Target:  5'- cCUggACCACcUGGACCUGGAGGACCa -3'
miRNA:   3'- aGAggUGGUGaGCCUGGACCUCCUGG- -5'
31658 3' -57.8 NC_006883.1 + 27602 0.8 0.27569
Target:  5'- --aCCAUCAUUUccaggaGGACCUGGAGGACCu -3'
miRNA:   3'- agaGGUGGUGAG------CCUGGACCUCCUGG- -5'
31658 3' -57.8 NC_006883.1 + 27674 0.8 0.27569
Target:  5'- --aCCAUCAUUUccaggaGGACCUGGAGGACCu -3'
miRNA:   3'- agaGGUGGUGAG------CCUGGACCUCCUGG- -5'
31658 3' -57.8 NC_006883.1 + 27729 0.69 0.808387
Target:  5'- -gUCCugugggACCugUCGGACCaGuAGGACCu -3'
miRNA:   3'- agAGG------UGGugAGCCUGGaCcUCCUGG- -5'
31658 3' -57.8 NC_006883.1 + 27766 0.77 0.404455
Target:  5'- gCUCCagcaggACCAgUUGGACCUGuGGGACCa -3'
miRNA:   3'- aGAGG------UGGUgAGCCUGGACcUCCUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.