miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31658 3' -57.8 NC_006883.1 + 223087 0.87 0.109279
Target:  5'- gUUCCACCACcagcaggaccaggaGGACCUGGAGGACCa -3'
miRNA:   3'- aGAGGUGGUGag------------CCUGGACCUCCUGG- -5'
31658 3' -57.8 NC_006883.1 + 222955 0.69 0.824775
Target:  5'- gUUCCACCAgcaGGACCaGcAGGACCa -3'
miRNA:   3'- aGAGGUGGUgagCCUGGaCcUCCUGG- -5'
31658 3' -57.8 NC_006883.1 + 165920 0.69 0.840535
Target:  5'- uUCUUaucCCACUUaGaACCUGGAGGACa -3'
miRNA:   3'- -AGAGgu-GGUGAGcC-UGGACCUCCUGg -5'
31658 3' -57.8 NC_006883.1 + 28563 0.73 0.593967
Target:  5'- gUUCCugg---UGGACCUGGAGGACCa -3'
miRNA:   3'- aGAGGuggugaGCCUGGACCUCCUGG- -5'
31658 3' -57.8 NC_006883.1 + 28539 0.73 0.622982
Target:  5'- cUUCCACCugaaGGACCUGuuGGACCa -3'
miRNA:   3'- aGAGGUGGugagCCUGGACcuCCUGG- -5'
31658 3' -57.8 NC_006883.1 + 28494 0.74 0.565176
Target:  5'- gUUCCACC---UGGACCaGGAGGACCn -3'
miRNA:   3'- aGAGGUGGugaGCCUGGaCCUCCUGG- -5'
31658 3' -57.8 NC_006883.1 + 28471 0.87 0.09866
Target:  5'- aUCUCCACCAgUaGGACCUGGAGGuCCu -3'
miRNA:   3'- -AGAGGUGGUgAgCCUGGACCUCCuGG- -5'
31658 3' -57.8 NC_006883.1 + 28431 0.82 0.22413
Target:  5'- cCUCCAUCAgaaccaucagaacCUggaGGACCUGGAGGACCa -3'
miRNA:   3'- aGAGGUGGU-------------GAg--CCUGGACCUCCUGG- -5'
31658 3' -57.8 NC_006883.1 + 28372 0.74 0.536763
Target:  5'- gUCagCACCAggaGGuCCUGGAGGACCa -3'
miRNA:   3'- -AGagGUGGUgagCCuGGACCUCCUGG- -5'
31658 3' -57.8 NC_006883.1 + 28335 0.83 0.18186
Target:  5'- gUUCCGCCuggacCUggaGGACCUGGAGGACCa -3'
miRNA:   3'- aGAGGUGGu----GAg--CCUGGACCUCCUGG- -5'
31658 3' -57.8 NC_006883.1 + 28275 0.85 0.129596
Target:  5'- gUUCCgccuggACCAgUUGGACCUGGAGGACCa -3'
miRNA:   3'- aGAGG------UGGUgAGCCUGGACCUCCUGG- -5'
31658 3' -57.8 NC_006883.1 + 28243 0.76 0.446373
Target:  5'- aUCUCCACCAgUaGGACCaGcAGGACCa -3'
miRNA:   3'- -AGAGGUGGUgAgCCUGGaCcUCCUGG- -5'
31658 3' -57.8 NC_006883.1 + 28152 0.66 0.943494
Target:  5'- gUUCCACCugaaGGACCaguUGGAccaguuGGACCu -3'
miRNA:   3'- aGAGGUGGugagCCUGG---ACCU------CCUGG- -5'
31658 3' -57.8 NC_006883.1 + 28112 0.84 0.150045
Target:  5'- -gUCCuguaggACCAgUUGGACCUGGAGGACCa -3'
miRNA:   3'- agAGG------UGGUgAGCCUGGACCUCCUGG- -5'
31658 3' -57.8 NC_006883.1 + 27766 0.77 0.404455
Target:  5'- gCUCCagcaggACCAgUUGGACCUGuGGGACCa -3'
miRNA:   3'- aGAGG------UGGUgAGCCUGGACcUCCUGG- -5'
31658 3' -57.8 NC_006883.1 + 27729 0.69 0.808387
Target:  5'- -gUCCugugggACCugUCGGACCaGuAGGACCu -3'
miRNA:   3'- agAGG------UGGugAGCCUGGaCcUCCUGG- -5'
31658 3' -57.8 NC_006883.1 + 27674 0.8 0.27569
Target:  5'- --aCCAUCAUUUccaggaGGACCUGGAGGACCu -3'
miRNA:   3'- agaGGUGGUGAG------CCUGGACCUCCUGG- -5'
31658 3' -57.8 NC_006883.1 + 27602 0.8 0.27569
Target:  5'- --aCCAUCAUUUccaggaGGACCUGGAGGACCu -3'
miRNA:   3'- agaGGUGGUGAG------CCUGGACCUCCUGG- -5'
31658 3' -57.8 NC_006883.1 + 27553 0.83 0.18186
Target:  5'- cCUggACCACcUGGACCUGGAGGACCa -3'
miRNA:   3'- aGAggUGGUGaGCCUGGACCUCCUGG- -5'
31658 3' -57.8 NC_006883.1 + 27527 0.81 0.246271
Target:  5'- aUCUCCACCugUaggaccugaUGGACCUGuAGGACCu -3'
miRNA:   3'- -AGAGGUGGugA---------GCCUGGACcUCCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.