miRNA display CGI


Results 21 - 40 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31658 3' -57.8 NC_006883.1 + 26571 0.74 0.549966
Target:  5'- gCUCCAUCAUUuccaggaggaccugcUGGACCUGuAGGACCu -3'
miRNA:   3'- aGAGGUGGUGA---------------GCCUGGACcUCCUGG- -5'
31658 3' -57.8 NC_006883.1 + 28372 0.74 0.536763
Target:  5'- gUCagCACCAggaGGuCCUGGAGGACCa -3'
miRNA:   3'- -AGagGUGGUgagCCuGGACCUCCUGG- -5'
31658 3' -57.8 NC_006883.1 + 26724 0.75 0.503352
Target:  5'- gCUCCAUCAUUuccaggaggaccugcUGGACCUGGAGuACCa -3'
miRNA:   3'- aGAGGUGGUGA---------------GCCUGGACCUCcUGG- -5'
31658 3' -57.8 NC_006883.1 + 23445 0.75 0.481588
Target:  5'- gUUCCugUAUUaccUGGACCUGGuGGACCu -3'
miRNA:   3'- aGAGGugGUGA---GCCUGGACCuCCUGG- -5'
31658 3' -57.8 NC_006883.1 + 22084 0.76 0.463806
Target:  5'- aCUUgGaCCAggaGGACCUGGAGGACCa -3'
miRNA:   3'- aGAGgU-GGUgagCCUGGACCUCCUGG- -5'
31658 3' -57.8 NC_006883.1 + 26804 0.76 0.455044
Target:  5'- ----gACCAgUUGGACCUGGuGGACCa -3'
miRNA:   3'- agaggUGGUgAGCCUGGACCuCCUGG- -5'
31658 3' -57.8 NC_006883.1 + 26637 0.76 0.455044
Target:  5'- gUUCCACCugUgGGACCaGcAGGACCa -3'
miRNA:   3'- aGAGGUGGugAgCCUGGaCcUCCUGG- -5'
31658 3' -57.8 NC_006883.1 + 28243 0.76 0.446373
Target:  5'- aUCUCCACCAgUaGGACCaGcAGGACCa -3'
miRNA:   3'- -AGAGGUGGUgAgCCUGGaCcUCCUGG- -5'
31658 3' -57.8 NC_006883.1 + 24958 0.76 0.420925
Target:  5'- ----gACCACUUGGACCUGuAGGACCu -3'
miRNA:   3'- agaggUGGUGAGCCUGGACcUCCUGG- -5'
31658 3' -57.8 NC_006883.1 + 27766 0.77 0.404455
Target:  5'- gCUCCagcaggACCAgUUGGACCUGuGGGACCa -3'
miRNA:   3'- aGAGG------UGGUgAGCCUGGACcUCCUGG- -5'
31658 3' -57.8 NC_006883.1 + 23746 0.79 0.312578
Target:  5'- --aCCACCACcagaUCcaggaggaccugcuGGACCUGGAGGACCu -3'
miRNA:   3'- agaGGUGGUG----AG--------------CCUGGACCUCCUGG- -5'
31658 3' -57.8 NC_006883.1 + 21910 0.79 0.301198
Target:  5'- --aUCACCuuGCggaccuugCGGACCUGGAGGACCa -3'
miRNA:   3'- agaGGUGG--UGa-------GCCUGGACCUCCUGG- -5'
31658 3' -57.8 NC_006883.1 + 21836 0.79 0.293359
Target:  5'- --aCCACCACUCGGACCaacaucaccuuGAGGGCCa -3'
miRNA:   3'- agaGGUGGUGAGCCUGGac---------CUCCUGG- -5'
31658 3' -57.8 NC_006883.1 + 27602 0.8 0.27569
Target:  5'- --aCCAUCAUUUccaggaGGACCUGGAGGACCu -3'
miRNA:   3'- agaGGUGGUGAG------CCUGGACCUCCUGG- -5'
31658 3' -57.8 NC_006883.1 + 27674 0.8 0.27569
Target:  5'- --aCCAUCAUUUccaggaGGACCUGGAGGACCu -3'
miRNA:   3'- agaGGUGGUGAG------CCUGGACCUCCUGG- -5'
31658 3' -57.8 NC_006883.1 + 23703 0.8 0.269589
Target:  5'- gCUggACCAgaUGGACCUGGAGGACCa -3'
miRNA:   3'- aGAggUGGUgaGCCUGGACCUCCUGG- -5'
31658 3' -57.8 NC_006883.1 + 22222 0.8 0.263598
Target:  5'- aCUUgGaCCAUcUGGACCUGGAGGACCa -3'
miRNA:   3'- aGAGgU-GGUGaGCCUGGACCUCCUGG- -5'
31658 3' -57.8 NC_006883.1 + 27527 0.81 0.246271
Target:  5'- aUCUCCACCugUaggaccugaUGGACCUGuAGGACCu -3'
miRNA:   3'- -AGAGGUGGugA---------GCCUGGACcUCCUGG- -5'
31658 3' -57.8 NC_006883.1 + 21752 0.81 0.235252
Target:  5'- --aCCAguuauuCCAgUUGGACCUGGAGGACCa -3'
miRNA:   3'- agaGGU------GGUgAGCCUGGACCUCCUGG- -5'
31658 3' -57.8 NC_006883.1 + 28431 0.82 0.22413
Target:  5'- cCUCCAUCAgaaccaucagaacCUggaGGACCUGGAGGACCa -3'
miRNA:   3'- aGAGGUGGU-------------GAg--CCUGGACCUCCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.