miRNA display CGI


Results 1 - 20 of 47 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31658 5' -59.7 NC_006883.1 + 22074 1.08 0.002655
Target:  5'- gGAGGACCUGGAGGACCACCAGCAGGAc -3'
miRNA:   3'- -CUCCUGGACCUCCUGGUGGUCGUCCU- -5'
31658 5' -59.7 NC_006883.1 + 21892 1.03 0.005863
Target:  5'- -cGGACCUGGAGGACCACCAGCAGGAc -3'
miRNA:   3'- cuCCUGGACCUCCUGGUGGUCGUCCU- -5'
31658 5' -59.7 NC_006883.1 + 23236 1.02 0.006346
Target:  5'- -uGGACCUGGAGGACCACCAGCAGGAc -3'
miRNA:   3'- cuCCUGGACCUCCUGGUGGUCGUCCU- -5'
31658 5' -59.7 NC_006883.1 + 28320 0.93 0.024888
Target:  5'- gGAGGACCUGGAGGACCaucaucACCAGUAGGAc -3'
miRNA:   3'- -CUCCUGGACCUCCUGG------UGGUCGUCCU- -5'
31658 5' -59.7 NC_006883.1 + 22154 0.92 0.032642
Target:  5'- uAGGACCUGGAGGACCaggugaaccacuuggACCAGCAGGAc -3'
miRNA:   3'- cUCCUGGACCUCCUGG---------------UGGUCGUCCU- -5'
31658 5' -59.7 NC_006883.1 + 28258 0.9 0.044565
Target:  5'- -uGGACCUGGAGGACCaucuccaccaguaggACCAGCAGGAc -3'
miRNA:   3'- cuCCUGGACCUCCUGG---------------UGGUCGUCCU- -5'
31658 5' -59.7 NC_006883.1 + 21737 0.88 0.058564
Target:  5'- -uGGACCUGGAGGACCagcaggACCAGUAGGAc -3'
miRNA:   3'- cuCCUGGACCUCCUGG------UGGUCGUCCU- -5'
31658 5' -59.7 NC_006883.1 + 223066 0.85 0.090289
Target:  5'- gGAGGACCUGGAggaccaacaGGACCACCAGaAGGAc -3'
miRNA:   3'- -CUCCUGGACCU---------CCUGGUGGUCgUCCU- -5'
31658 5' -59.7 NC_006883.1 + 25007 0.85 0.094955
Target:  5'- gGAGGACCUGGAGGACCGCUAGgAccacuuGGAc -3'
miRNA:   3'- -CUCCUGGACCUCCUGGUGGUCgU------CCU- -5'
31658 5' -59.7 NC_006883.1 + 23283 0.84 0.100856
Target:  5'- gGAGGACCUuGAGGACCaggagcaccaucaucACCAGCAGGAc -3'
miRNA:   3'- -CUCCUGGAcCUCCUGG---------------UGGUCGUCCU- -5'
31658 5' -59.7 NC_006883.1 + 23208 0.84 0.108719
Target:  5'- gGAGGACCaGGAGGACCacuuggaccaucaggACCAGCAGGu -3'
miRNA:   3'- -CUCCUGGaCCUCCUGG---------------UGGUCGUCCu -5'
31658 5' -59.7 NC_006883.1 + 22210 0.83 0.113144
Target:  5'- -uGGACCUGGAGGACCAgCAGgacCAGGAc -3'
miRNA:   3'- cuCCUGGACCUCCUGGUgGUC---GUCCU- -5'
31658 5' -59.7 NC_006883.1 + 27542 0.83 0.124953
Target:  5'- -uGGACCUGGAGGACCAUCuccaccuGUAGGAc -3'
miRNA:   3'- cuCCUGGACCUCCUGGUGGu------CGUCCU- -5'
31658 5' -59.7 NC_006883.1 + 26984 0.81 0.152061
Target:  5'- gGAGGACCUGGAGa---ACCAGCAGGAc -3'
miRNA:   3'- -CUCCUGGACCUCcuggUGGUCGUCCU- -5'
31658 5' -59.7 NC_006883.1 + 27661 0.81 0.163537
Target:  5'- gGAGGACCUGGAGGACCuGCUGGaccuGGAg -3'
miRNA:   3'- -CUCCUGGACCUCCUGG-UGGUCgu--CCU- -5'
31658 5' -59.7 NC_006883.1 + 26671 0.81 0.167533
Target:  5'- -uGGACCUGGAGGACCgucuggACCAGUuGGAc -3'
miRNA:   3'- cuCCUGGACCUCCUGG------UGGUCGuCCU- -5'
31658 5' -59.7 NC_006883.1 + 28096 0.8 0.175787
Target:  5'- -uGGACCUGGAGGACC---AGCAGGAc -3'
miRNA:   3'- cuCCUGGACCUCCUGGuggUCGUCCU- -5'
31658 5' -59.7 NC_006883.1 + 23692 0.8 0.175787
Target:  5'- -uGGACCUGGAGGACC---AGCAGGAc -3'
miRNA:   3'- cuCCUGGACCUCCUGGuggUCGUCCU- -5'
31658 5' -59.7 NC_006883.1 + 28486 0.8 0.184401
Target:  5'- -uGGACCaGGAGGACCaucuccACCAGUAGGAc -3'
miRNA:   3'- cuCCUGGaCCUCCUGG------UGGUCGUCCU- -5'
31658 5' -59.7 NC_006883.1 + 27589 0.8 0.188846
Target:  5'- gGAGGACCUGGAGGACCugCu---GGAc -3'
miRNA:   3'- -CUCCUGGACCUCCUGGugGucguCCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.