miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31658 5' -59.7 NC_006883.1 + 21737 0.88 0.058564
Target:  5'- -uGGACCUGGAGGACCagcaggACCAGUAGGAc -3'
miRNA:   3'- cuCCUGGACCUCCUGG------UGGUCGUCCU- -5'
31658 5' -59.7 NC_006883.1 + 21774 0.75 0.370559
Target:  5'- aAGGACCUGGAGGACCagaaggACCAGUu--- -3'
miRNA:   3'- cUCCUGGACCUCCUGG------UGGUCGuccu -5'
31658 5' -59.7 NC_006883.1 + 21846 0.73 0.474125
Target:  5'- uAGGACCaGGAccaccacucGGACCaacaucaccuugaggGCCAGCAGGAc -3'
miRNA:   3'- cUCCUGGaCCU---------CCUGG---------------UGGUCGUCCU- -5'
31658 5' -59.7 NC_006883.1 + 21892 1.03 0.005863
Target:  5'- -cGGACCUGGAGGACCACCAGCAGGAc -3'
miRNA:   3'- cuCCUGGACCUCCUGGUGGUCGUCCU- -5'
31658 5' -59.7 NC_006883.1 + 21979 0.78 0.244222
Target:  5'- -uGGACCaGGAGGACCugCAGgacCAGGAg -3'
miRNA:   3'- cuCCUGGaCCUCCUGGugGUC---GUCCU- -5'
31658 5' -59.7 NC_006883.1 + 22042 0.78 0.240882
Target:  5'- -uGGACCUGuAGGACCgucuggacccguaggACCAGCAGGAc -3'
miRNA:   3'- cuCCUGGACcUCCUGG---------------UGGUCGUCCU- -5'
31658 5' -59.7 NC_006883.1 + 22074 1.08 0.002655
Target:  5'- gGAGGACCUGGAGGACCACCAGCAGGAc -3'
miRNA:   3'- -CUCCUGGACCUCCUGGUGGUCGUCCU- -5'
31658 5' -59.7 NC_006883.1 + 22099 0.77 0.267484
Target:  5'- -cGGACCUGGAGGACCACUu---GGAc -3'
miRNA:   3'- cuCCUGGACCUCCUGGUGGucguCCU- -5'
31658 5' -59.7 NC_006883.1 + 22154 0.92 0.032642
Target:  5'- uAGGACCUGGAGGACCaggugaaccacuuggACCAGCAGGAc -3'
miRNA:   3'- cUCCUGGACCUCCUGG---------------UGGUCGUCCU- -5'
31658 5' -59.7 NC_006883.1 + 22175 0.78 0.233235
Target:  5'- uAGGACCUGGAGGACCACCAc----- -3'
miRNA:   3'- cUCCUGGACCUCCUGGUGGUcguccu -5'
31658 5' -59.7 NC_006883.1 + 22210 0.83 0.113144
Target:  5'- -uGGACCUGGAGGACCAgCAGgacCAGGAc -3'
miRNA:   3'- cuCCUGGACCUCCUGGUgGUC---GUCCU- -5'
31658 5' -59.7 NC_006883.1 + 22238 0.71 0.553769
Target:  5'- cAGGACCaGGAGGACCACUu---GGAc -3'
miRNA:   3'- cUCCUGGaCCUCCUGGUGGucguCCU- -5'
31658 5' -59.7 NC_006883.1 + 23159 0.67 0.799209
Target:  5'- ---aACCUGGAG---CACCAGCAGGAc -3'
miRNA:   3'- cuccUGGACCUCcugGUGGUCGUCCU- -5'
31658 5' -59.7 NC_006883.1 + 23208 0.84 0.108719
Target:  5'- gGAGGACCaGGAGGACCacuuggaccaucaggACCAGCAGGu -3'
miRNA:   3'- -CUCCUGGaCCUCCUGG---------------UGGUCGUCCu -5'
31658 5' -59.7 NC_006883.1 + 23236 1.02 0.006346
Target:  5'- -uGGACCUGGAGGACCACCAGCAGGAc -3'
miRNA:   3'- cuCCUGGACCUCCUGGUGGUCGUCCU- -5'
31658 5' -59.7 NC_006883.1 + 23283 0.84 0.100856
Target:  5'- gGAGGACCUuGAGGACCaggagcaccaucaucACCAGCAGGAc -3'
miRNA:   3'- -CUCCUGGAcCUCCUGG---------------UGGUCGUCCU- -5'
31658 5' -59.7 NC_006883.1 + 23368 0.77 0.278522
Target:  5'- -uGGACCUGGAuuugaaggaccuacaGGACCaguuggaccuggagaACCAGCAGGAc -3'
miRNA:   3'- cuCCUGGACCU---------------CCUGG---------------UGGUCGUCCU- -5'
31658 5' -59.7 NC_006883.1 + 23410 0.67 0.794066
Target:  5'- -uGGACCUGGuccugcugguccuccAGGuCCAucugguCCAGCAGGu -3'
miRNA:   3'- cuCCUGGACC---------------UCCuGGU------GGUCGUCCu -5'
31658 5' -59.7 NC_006883.1 + 23431 0.7 0.611613
Target:  5'- -uGGACCUGGuGGACCu---GUAGGAc -3'
miRNA:   3'- cuCCUGGACCuCCUGGugguCGUCCU- -5'
31658 5' -59.7 NC_006883.1 + 23692 0.8 0.175787
Target:  5'- -uGGACCUGGAGGACC---AGCAGGAc -3'
miRNA:   3'- cuCCUGGACCUCCUGGuggUCGUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.