miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31658 5' -59.7 NC_006883.1 + 223066 0.85 0.090289
Target:  5'- gGAGGACCUGGAggaccaacaGGACCACCAGaAGGAc -3'
miRNA:   3'- -CUCCUGGACCU---------CCUGGUGGUCgUCCU- -5'
31658 5' -59.7 NC_006883.1 + 223026 0.72 0.501319
Target:  5'- uAGGACCaGGAuuuccaacaGGACCaguugcaccaggcgaACCAGCAGGAc -3'
miRNA:   3'- cUCCUGGaCCU---------CCUGG---------------UGGUCGUCCU- -5'
31658 5' -59.7 NC_006883.1 + 222975 0.67 0.815985
Target:  5'- cAGGugaACCUuGuGGACCaguuccACCAGCAGGAc -3'
miRNA:   3'- cUCC---UGGAcCuCCUGG------UGGUCGUCCU- -5'
31658 5' -59.7 NC_006883.1 + 222936 0.74 0.402264
Target:  5'- cAGGACCaGGAGaACCaguaggACCAGCAGGAc -3'
miRNA:   3'- cUCCUGGaCCUCcUGG------UGGUCGUCCU- -5'
31658 5' -59.7 NC_006883.1 + 212143 0.68 0.736587
Target:  5'- aGAGGACCUGGAucaGGugCuccugguaCAGCAGa- -3'
miRNA:   3'- -CUCCUGGACCU---CCugGug------GUCGUCcu -5'
31658 5' -59.7 NC_006883.1 + 211193 0.66 0.840776
Target:  5'- cAGGAuggagcuuauCCUGGAGGACCACaagccuuugaagauaAGUAuGGAu -3'
miRNA:   3'- cUCCU----------GGACCUCCUGGUGg--------------UCGU-CCU- -5'
31658 5' -59.7 NC_006883.1 + 28555 0.77 0.286081
Target:  5'- -uGGACCUGGAGGACCACUuccaccugaAGGAc -3'
miRNA:   3'- cuCCUGGACCUCCUGGUGGucg------UCCU- -5'
31658 5' -59.7 NC_006883.1 + 28486 0.8 0.184401
Target:  5'- -uGGACCaGGAGGACCaucuccACCAGUAGGAc -3'
miRNA:   3'- cuCCUGGaCCUCCUGG------UGGUCGUCCU- -5'
31658 5' -59.7 NC_006883.1 + 28452 0.7 0.611613
Target:  5'- gGAGGuCCUGGAGGACCACUuccuccauCAGa- -3'
miRNA:   3'- -CUCCuGGACCUCCUGGUGGuc------GUCcu -5'
31658 5' -59.7 NC_006883.1 + 28407 0.76 0.326297
Target:  5'- gGAGGACCUGGAGGACCACUu------ -3'
miRNA:   3'- -CUCCUGGACCUCCUGGUGGucguccu -5'
31658 5' -59.7 NC_006883.1 + 28362 0.79 0.222667
Target:  5'- gGAGGuCCUGGAGGACC---AGCAGGAc -3'
miRNA:   3'- -CUCCuGGACCUCCUGGuggUCGUCCU- -5'
31658 5' -59.7 NC_006883.1 + 28320 0.93 0.024888
Target:  5'- gGAGGACCUGGAGGACCaucaucACCAGUAGGAc -3'
miRNA:   3'- -CUCCUGGACCUCCUGG------UGGUCGUCCU- -5'
31658 5' -59.7 NC_006883.1 + 28258 0.9 0.044565
Target:  5'- -uGGACCUGGAGGACCaucuccaccaguaggACCAGCAGGAc -3'
miRNA:   3'- cuCCUGGACCUCCUGG---------------UGGUCGUCCU- -5'
31658 5' -59.7 NC_006883.1 + 28096 0.8 0.175787
Target:  5'- -uGGACCUGGAGGACC---AGCAGGAc -3'
miRNA:   3'- cuCCUGGACCUCCUGGuggUCGUCCU- -5'
31658 5' -59.7 NC_006883.1 + 27741 0.7 0.660245
Target:  5'- uGGGACCaguUGGuccuguGGGACCugucggACCAGUAGGAc -3'
miRNA:   3'- cUCCUGG---ACC------UCCUGG------UGGUCGUCCU- -5'
31658 5' -59.7 NC_006883.1 + 27661 0.81 0.163537
Target:  5'- gGAGGACCUGGAGGACCuGCUGGaccuGGAg -3'
miRNA:   3'- -CUCCUGGACCUCCUGG-UGGUCgu--CCU- -5'
31658 5' -59.7 NC_006883.1 + 27589 0.8 0.188846
Target:  5'- gGAGGACCUGGAGGACCugCu---GGAc -3'
miRNA:   3'- -CUCCUGGACCUCCUGGugGucguCCU- -5'
31658 5' -59.7 NC_006883.1 + 27542 0.83 0.124953
Target:  5'- -uGGACCUGGAGGACCAUCuccaccuGUAGGAc -3'
miRNA:   3'- cuCCUGGACCUCCUGGUGGu------CGUCCU- -5'
31658 5' -59.7 NC_006883.1 + 27506 0.7 0.631071
Target:  5'- -uGGACCUGuAGGACCugCuggaccuGUAGGAc -3'
miRNA:   3'- cuCCUGGACcUCCUGGugGu------CGUCCU- -5'
31658 5' -59.7 NC_006883.1 + 26984 0.81 0.152061
Target:  5'- gGAGGACCUGGAGa---ACCAGCAGGAc -3'
miRNA:   3'- -CUCCUGGACCUCcuggUGGUCGUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.