Results 21 - 40 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31658 | 5' | -59.7 | NC_006883.1 | + | 23719 | 0.74 | 0.394177 |
Target: 5'- -uGGACCUGGAGGACCugCu---GGAc -3' miRNA: 3'- cuCCUGGACCUCCUGGugGucguCCU- -5' |
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31658 | 5' | -59.7 | NC_006883.1 | + | 24969 | 0.68 | 0.773038 |
Target: 5'- -uGGACCUGauGGACCACUuggaccuGUAGGAc -3' miRNA: 3'- cuCCUGGACcuCCUGGUGGu------CGUCCU- -5' |
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31658 | 5' | -59.7 | NC_006883.1 | + | 25007 | 0.85 | 0.094955 |
Target: 5'- gGAGGACCUGGAGGACCGCUAGgAccacuuGGAc -3' miRNA: 3'- -CUCCUGGACCUCCUGGUGGUCgU------CCU- -5' |
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31658 | 5' | -59.7 | NC_006883.1 | + | 26556 | 0.69 | 0.708359 |
Target: 5'- gGAGGACCUGcuGGACCuguaggACCuGCuGGAc -3' miRNA: 3'- -CUCCUGGACcuCCUGG------UGGuCGuCCU- -5' |
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31658 | 5' | -59.7 | NC_006883.1 | + | 26671 | 0.81 | 0.167533 |
Target: 5'- -uGGACCUGGAGGACCgucuggACCAGUuGGAc -3' miRNA: 3'- cuCCUGGACCUCCUGG------UGGUCGuCCU- -5' |
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31658 | 5' | -59.7 | NC_006883.1 | + | 26770 | 0.8 | 0.193386 |
Target: 5'- -uGGACCUGcAGGACCaguugcACCAGCAGGAc -3' miRNA: 3'- cuCCUGGACcUCCUGG------UGGUCGUCCU- -5' |
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31658 | 5' | -59.7 | NC_006883.1 | + | 26817 | 0.75 | 0.389376 |
Target: 5'- uGGGGACCaGcAGGACCaguuggaccugguggACCAGCAGGAc -3' miRNA: 3'- -CUCCUGGaCcUCCUGG---------------UGGUCGUCCU- -5' |
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31658 | 5' | -59.7 | NC_006883.1 | + | 26984 | 0.81 | 0.152061 |
Target: 5'- gGAGGACCUGGAGa---ACCAGCAGGAc -3' miRNA: 3'- -CUCCUGGACCUCcuggUGGUCGUCCU- -5' |
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31658 | 5' | -59.7 | NC_006883.1 | + | 27506 | 0.7 | 0.631071 |
Target: 5'- -uGGACCUGuAGGACCugCuggaccuGUAGGAc -3' miRNA: 3'- cuCCUGGACcUCCUGGugGu------CGUCCU- -5' |
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31658 | 5' | -59.7 | NC_006883.1 | + | 27542 | 0.83 | 0.124953 |
Target: 5'- -uGGACCUGGAGGACCAUCuccaccuGUAGGAc -3' miRNA: 3'- cuCCUGGACCUCCUGGUGGu------CGUCCU- -5' |
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31658 | 5' | -59.7 | NC_006883.1 | + | 27589 | 0.8 | 0.188846 |
Target: 5'- gGAGGACCUGGAGGACCugCu---GGAc -3' miRNA: 3'- -CUCCUGGACCUCCUGGugGucguCCU- -5' |
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31658 | 5' | -59.7 | NC_006883.1 | + | 27661 | 0.81 | 0.163537 |
Target: 5'- gGAGGACCUGGAGGACCuGCUGGaccuGGAg -3' miRNA: 3'- -CUCCUGGACCUCCUGG-UGGUCgu--CCU- -5' |
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31658 | 5' | -59.7 | NC_006883.1 | + | 27741 | 0.7 | 0.660245 |
Target: 5'- uGGGACCaguUGGuccuguGGGACCugucggACCAGUAGGAc -3' miRNA: 3'- cUCCUGG---ACC------UCCUGG------UGGUCGUCCU- -5' |
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31658 | 5' | -59.7 | NC_006883.1 | + | 28096 | 0.8 | 0.175787 |
Target: 5'- -uGGACCUGGAGGACC---AGCAGGAc -3' miRNA: 3'- cuCCUGGACCUCCUGGuggUCGUCCU- -5' |
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31658 | 5' | -59.7 | NC_006883.1 | + | 28258 | 0.9 | 0.044565 |
Target: 5'- -uGGACCUGGAGGACCaucuccaccaguaggACCAGCAGGAc -3' miRNA: 3'- cuCCUGGACCUCCUGG---------------UGGUCGUCCU- -5' |
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31658 | 5' | -59.7 | NC_006883.1 | + | 28320 | 0.93 | 0.024888 |
Target: 5'- gGAGGACCUGGAGGACCaucaucACCAGUAGGAc -3' miRNA: 3'- -CUCCUGGACCUCCUGG------UGGUCGUCCU- -5' |
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31658 | 5' | -59.7 | NC_006883.1 | + | 28362 | 0.79 | 0.222667 |
Target: 5'- gGAGGuCCUGGAGGACC---AGCAGGAc -3' miRNA: 3'- -CUCCuGGACCUCCUGGuggUCGUCCU- -5' |
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31658 | 5' | -59.7 | NC_006883.1 | + | 28407 | 0.76 | 0.326297 |
Target: 5'- gGAGGACCUGGAGGACCACUu------ -3' miRNA: 3'- -CUCCUGGACCUCCUGGUGGucguccu -5' |
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31658 | 5' | -59.7 | NC_006883.1 | + | 28452 | 0.7 | 0.611613 |
Target: 5'- gGAGGuCCUGGAGGACCACUuccuccauCAGa- -3' miRNA: 3'- -CUCCuGGACCUCCUGGUGGuc------GUCcu -5' |
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31658 | 5' | -59.7 | NC_006883.1 | + | 28486 | 0.8 | 0.184401 |
Target: 5'- -uGGACCaGGAGGACCaucuccACCAGUAGGAc -3' miRNA: 3'- cuCCUGGaCCUCCUGG------UGGUCGUCCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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