miRNA display CGI


Results 21 - 40 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31658 5' -59.7 NC_006883.1 + 23368 0.77 0.278522
Target:  5'- -uGGACCUGGAuuugaaggaccuacaGGACCaguuggaccuggagaACCAGCAGGAc -3'
miRNA:   3'- cuCCUGGACCU---------------CCUGG---------------UGGUCGUCCU- -5'
31658 5' -59.7 NC_006883.1 + 22099 0.77 0.267484
Target:  5'- -cGGACCUGGAGGACCACUu---GGAc -3'
miRNA:   3'- cuCCUGGACCUCCUGGUGGucguCCU- -5'
31658 5' -59.7 NC_006883.1 + 21979 0.78 0.244222
Target:  5'- -uGGACCaGGAGGACCugCAGgacCAGGAg -3'
miRNA:   3'- cuCCUGGaCCUCCUGGugGUC---GUCCU- -5'
31658 5' -59.7 NC_006883.1 + 22042 0.78 0.240882
Target:  5'- -uGGACCUGuAGGACCgucuggacccguaggACCAGCAGGAc -3'
miRNA:   3'- cuCCUGGACcUCCUGG---------------UGGUCGUCCU- -5'
31658 5' -59.7 NC_006883.1 + 22175 0.78 0.233235
Target:  5'- uAGGACCUGGAGGACCACCAc----- -3'
miRNA:   3'- cUCCUGGACCUCCUGGUGGUcguccu -5'
31658 5' -59.7 NC_006883.1 + 28362 0.79 0.222667
Target:  5'- gGAGGuCCUGGAGGACC---AGCAGGAc -3'
miRNA:   3'- -CUCCuGGACCUCCUGGuggUCGUCCU- -5'
31658 5' -59.7 NC_006883.1 + 26770 0.8 0.193386
Target:  5'- -uGGACCUGcAGGACCaguugcACCAGCAGGAc -3'
miRNA:   3'- cuCCUGGACcUCCUGG------UGGUCGUCCU- -5'
31658 5' -59.7 NC_006883.1 + 27589 0.8 0.188846
Target:  5'- gGAGGACCUGGAGGACCugCu---GGAc -3'
miRNA:   3'- -CUCCUGGACCUCCUGGugGucguCCU- -5'
31658 5' -59.7 NC_006883.1 + 28486 0.8 0.184401
Target:  5'- -uGGACCaGGAGGACCaucuccACCAGUAGGAc -3'
miRNA:   3'- cuCCUGGaCCUCCUGG------UGGUCGUCCU- -5'
31658 5' -59.7 NC_006883.1 + 23692 0.8 0.175787
Target:  5'- -uGGACCUGGAGGACC---AGCAGGAc -3'
miRNA:   3'- cuCCUGGACCUCCUGGuggUCGUCCU- -5'
31658 5' -59.7 NC_006883.1 + 28096 0.8 0.175787
Target:  5'- -uGGACCUGGAGGACC---AGCAGGAc -3'
miRNA:   3'- cuCCUGGACCUCCUGGuggUCGUCCU- -5'
31658 5' -59.7 NC_006883.1 + 26671 0.81 0.167533
Target:  5'- -uGGACCUGGAGGACCgucuggACCAGUuGGAc -3'
miRNA:   3'- cuCCUGGACCUCCUGG------UGGUCGuCCU- -5'
31658 5' -59.7 NC_006883.1 + 27661 0.81 0.163537
Target:  5'- gGAGGACCUGGAGGACCuGCUGGaccuGGAg -3'
miRNA:   3'- -CUCCUGGACCUCCUGG-UGGUCgu--CCU- -5'
31658 5' -59.7 NC_006883.1 + 26984 0.81 0.152061
Target:  5'- gGAGGACCUGGAGa---ACCAGCAGGAc -3'
miRNA:   3'- -CUCCUGGACCUCcuggUGGUCGUCCU- -5'
31658 5' -59.7 NC_006883.1 + 27542 0.83 0.124953
Target:  5'- -uGGACCUGGAGGACCAUCuccaccuGUAGGAc -3'
miRNA:   3'- cuCCUGGACCUCCUGGUGGu------CGUCCU- -5'
31658 5' -59.7 NC_006883.1 + 22210 0.83 0.113144
Target:  5'- -uGGACCUGGAGGACCAgCAGgacCAGGAc -3'
miRNA:   3'- cuCCUGGACCUCCUGGUgGUC---GUCCU- -5'
31658 5' -59.7 NC_006883.1 + 23208 0.84 0.108719
Target:  5'- gGAGGACCaGGAGGACCacuuggaccaucaggACCAGCAGGu -3'
miRNA:   3'- -CUCCUGGaCCUCCUGG---------------UGGUCGUCCu -5'
31658 5' -59.7 NC_006883.1 + 23283 0.84 0.100856
Target:  5'- gGAGGACCUuGAGGACCaggagcaccaucaucACCAGCAGGAc -3'
miRNA:   3'- -CUCCUGGAcCUCCUGG---------------UGGUCGUCCU- -5'
31658 5' -59.7 NC_006883.1 + 25007 0.85 0.094955
Target:  5'- gGAGGACCUGGAGGACCGCUAGgAccacuuGGAc -3'
miRNA:   3'- -CUCCUGGACCUCCUGGUGGUCgU------CCU- -5'
31658 5' -59.7 NC_006883.1 + 223066 0.85 0.090289
Target:  5'- gGAGGACCUGGAggaccaacaGGACCACCAGaAGGAc -3'
miRNA:   3'- -CUCCUGGACCU---------CCUGGUGGUCgUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.