miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31659 3' -59.6 NC_006883.1 + 22206 1.08 0.00268
Target:  5'- cCUGGAGGACCAGCAGGACCAGGACCAc -3'
miRNA:   3'- -GACCUCCUGGUCGUCCUGGUCCUGGU- -5'
31659 3' -59.6 NC_006883.1 + 23688 1.01 0.00833
Target:  5'- cCUGGAGGACCAGCAGGACCAGGuCCAc -3'
miRNA:   3'- -GACCUCCUGGUCGUCCUGGUCCuGGU- -5'
31659 3' -59.6 NC_006883.1 + 21733 0.99 0.010838
Target:  5'- cCUGGAGGACCAGCAGGACCAguaGGACCAc -3'
miRNA:   3'- -GACCUCCUGGUCGUCCUGGU---CCUGGU- -5'
31659 3' -59.6 NC_006883.1 + 21814 0.95 0.020885
Target:  5'- cCUuGAGGGCCAGCAGGACCAGGACCGc -3'
miRNA:   3'- -GAcCUCCUGGUCGUCCUGGUCCUGGU- -5'
31659 3' -59.6 NC_006883.1 + 28356 0.94 0.023801
Target:  5'- cCUGGAGGACCAGCAGGACCAguuccgccuGGACCu -3'
miRNA:   3'- -GACCUCCUGGUCGUCCUGGU---------CCUGGu -5'
31659 3' -59.6 NC_006883.1 + 21888 0.91 0.036108
Target:  5'- cCUGGAGGACCaccAGCAGGACCagAGGACCAg -3'
miRNA:   3'- -GACCUCCUGG---UCGUCCUGG--UCCUGGU- -5'
31659 3' -59.6 NC_006883.1 + 23232 0.9 0.040054
Target:  5'- cCUGGAGGACCaccAGCAGGACCaggAGGACCAg -3'
miRNA:   3'- -GACCUCCUGG---UCGUCCUGG---UCCUGGU- -5'
31659 3' -59.6 NC_006883.1 + 26793 0.9 0.042183
Target:  5'- cCUGGuGGACCAGCAGGACCAguuGGACCu -3'
miRNA:   3'- -GACCuCCUGGUCGUCCUGGU---CCUGGu -5'
31659 3' -59.6 NC_006883.1 + 21973 0.88 0.056017
Target:  5'- -aGGAGGACCuGCAGGACCAGGAgauCCAg -3'
miRNA:   3'- gaCCUCCUGGuCGUCCUGGUCCU---GGU- -5'
31659 3' -59.6 NC_006883.1 + 22026 0.88 0.057474
Target:  5'- uCUGGAcccguaGGACCAGCAGGACCAguuGGACCAg -3'
miRNA:   3'- -GACCU------CCUGGUCGUCCUGGU---CCUGGU- -5'
31659 3' -59.6 NC_006883.1 + 23331 0.88 0.058968
Target:  5'- cCUGGAGaACCAGCAGGACCuugAGGACCAg -3'
miRNA:   3'- -GACCUCcUGGUCGUCCUGG---UCCUGGU- -5'
31659 3' -59.6 NC_006883.1 + 22068 0.88 0.062069
Target:  5'- cCUGGAGGACCAccaGCAGGACCAguuGGACCu -3'
miRNA:   3'- -GACCUCCUGGU---CGUCCUGGU---CCUGGu -5'
31659 3' -59.6 NC_006883.1 + 223060 0.86 0.07612
Target:  5'- cCUGGAGGACCAaCAGGACCaccagaAGGACCAg -3'
miRNA:   3'- -GACCUCCUGGUcGUCCUGG------UCCUGGU- -5'
31659 3' -59.6 NC_006883.1 + 26631 0.85 0.090874
Target:  5'- cCUGuGGGACCAGCAGGACCAguuGGACCu -3'
miRNA:   3'- -GACcUCCUGGUCGUCCUGGU---CCUGGu -5'
31659 3' -59.6 NC_006883.1 + 23157 0.85 0.090874
Target:  5'- cCUGGAGcACCAGCAGGACCAguuGGACCu -3'
miRNA:   3'- -GACCUCcUGGUCGUCCUGGU---CCUGGu -5'
31659 3' -59.6 NC_006883.1 + 25010 0.85 0.095566
Target:  5'- cCUGGAGGACCuGgAGGACCgcuAGGACCAc -3'
miRNA:   3'- -GACCUCCUGGuCgUCCUGG---UCCUGGU- -5'
31659 3' -59.6 NC_006883.1 + 28254 0.84 0.100486
Target:  5'- cCUGGAGGACCaucuccaccAGUAGGACCagcAGGACCAg -3'
miRNA:   3'- -GACCUCCUGG---------UCGUCCUGG---UCCUGGU- -5'
31659 3' -59.6 NC_006883.1 + 28314 0.84 0.100486
Target:  5'- cCUGGAGGACCaucaucaccAGUAGGACCAguuGGACCAg -3'
miRNA:   3'- -GACCUCCUGG---------UCGUCCUGGU---CCUGGU- -5'
31659 3' -59.6 NC_006883.1 + 222963 0.84 0.101498
Target:  5'- gUGGAccaguuccaccagcaGGACCAGCAGGACCAGGAgaaCCAg -3'
miRNA:   3'- gACCU---------------CCUGGUCGUCCUGGUCCU---GGU- -5'
31659 3' -59.6 NC_006883.1 + 21940 0.84 0.103035
Target:  5'- -aGGAGGACCAGUuGGACCuguuGGACCAg -3'
miRNA:   3'- gaCCUCCUGGUCGuCCUGGu---CCUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.