miRNA display CGI


Results 1 - 20 of 60 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31659 3' -59.6 NC_006883.1 + 21733 0.99 0.010838
Target:  5'- cCUGGAGGACCAGCAGGACCAguaGGACCAc -3'
miRNA:   3'- -GACCUCCUGGUCGUCCUGGU---CCUGGU- -5'
31659 3' -59.6 NC_006883.1 + 21769 0.8 0.194464
Target:  5'- cCUGGAGGACCAGaAGGACCAGuuauuCCAg -3'
miRNA:   3'- -GACCUCCUGGUCgUCCUGGUCcu---GGU- -5'
31659 3' -59.6 NC_006883.1 + 21814 0.95 0.020885
Target:  5'- cCUuGAGGGCCAGCAGGACCAGGACCGc -3'
miRNA:   3'- -GAcCUCCUGGUCGUCCUGGUCCUGGU- -5'
31659 3' -59.6 NC_006883.1 + 21857 0.81 0.156716
Target:  5'- -aGcAGGuCCAGUAGGACCAGGACCAc -3'
miRNA:   3'- gaCcUCCuGGUCGUCCUGGUCCUGGU- -5'
31659 3' -59.6 NC_006883.1 + 21888 0.91 0.036108
Target:  5'- cCUGGAGGACCaccAGCAGGACCagAGGACCAg -3'
miRNA:   3'- -GACCUCCUGG---UCGUCCUGG--UCCUGGU- -5'
31659 3' -59.6 NC_006883.1 + 21940 0.84 0.103035
Target:  5'- -aGGAGGACCAGUuGGACCuguuGGACCAg -3'
miRNA:   3'- gaCCUCCUGGUCGuCCUGGu---CCUGGU- -5'
31659 3' -59.6 NC_006883.1 + 21973 0.88 0.056017
Target:  5'- -aGGAGGACCuGCAGGACCAGGAgauCCAg -3'
miRNA:   3'- gaCCUCCUGGuCGUCCUGGUCCU---GGU- -5'
31659 3' -59.6 NC_006883.1 + 22026 0.88 0.057474
Target:  5'- uCUGGAcccguaGGACCAGCAGGACCAguuGGACCAg -3'
miRNA:   3'- -GACCU------CCUGGUCGUCCUGGU---CCUGGU- -5'
31659 3' -59.6 NC_006883.1 + 22068 0.88 0.062069
Target:  5'- cCUGGAGGACCAccaGCAGGACCAguuGGACCu -3'
miRNA:   3'- -GACCUCCUGGU---CGUCCUGGU---CCUGGu -5'
31659 3' -59.6 NC_006883.1 + 22095 0.75 0.379996
Target:  5'- cCUGGAGGACCAcUuGGACCAGGAg-- -3'
miRNA:   3'- -GACCUCCUGGUcGuCCUGGUCCUggu -5'
31659 3' -59.6 NC_006883.1 + 22149 0.82 0.142165
Target:  5'- cCUGGAGGACCAGguGaACCAcuuGGACCAg -3'
miRNA:   3'- -GACCUCCUGGUCguCcUGGU---CCUGGU- -5'
31659 3' -59.6 NC_006883.1 + 22206 1.08 0.00268
Target:  5'- cCUGGAGGACCAGCAGGACCAGGACCAc -3'
miRNA:   3'- -GACCUCCUGGUCGUCCUGGUCCUGGU- -5'
31659 3' -59.6 NC_006883.1 + 22240 0.76 0.342184
Target:  5'- -aGcAGGACCAGgAGGACCAcuuGGACCAu -3'
miRNA:   3'- gaCcUCCUGGUCgUCCUGGU---CCUGGU- -5'
31659 3' -59.6 NC_006883.1 + 22607 0.66 0.849016
Target:  5'- uCUGGuacaacuGGAUCuGguGGAUCAGGugUAa -3'
miRNA:   3'- -GACCu------CCUGGuCguCCUGGUCCugGU- -5'
31659 3' -59.6 NC_006883.1 + 23157 0.85 0.090874
Target:  5'- cCUGGAGcACCAGCAGGACCAguuGGACCu -3'
miRNA:   3'- -GACCUCcUGGUCGUCCUGGU---CCUGGu -5'
31659 3' -59.6 NC_006883.1 + 23200 0.75 0.356977
Target:  5'- -aGGAGGACCAcuuGGACCaucAGGACCAg -3'
miRNA:   3'- gaCCUCCUGGUcguCCUGG---UCCUGGU- -5'
31659 3' -59.6 NC_006883.1 + 23232 0.9 0.040054
Target:  5'- cCUGGAGGACCaccAGCAGGACCaggAGGACCAg -3'
miRNA:   3'- -GACCUCCUGG---UCGUCCUGG---UCCUGGU- -5'
31659 3' -59.6 NC_006883.1 + 23286 0.81 0.17679
Target:  5'- cCUGGAGGACCuugAGGACCAGGAgCAc -3'
miRNA:   3'- -GACCUCCUGGucgUCCUGGUCCUgGU- -5'
31659 3' -59.6 NC_006883.1 + 23331 0.88 0.058968
Target:  5'- cCUGGAGaACCAGCAGGACCuugAGGACCAg -3'
miRNA:   3'- -GACCUCcUGGUCGUCCUGG---UCCUGGU- -5'
31659 3' -59.6 NC_006883.1 + 23382 0.74 0.423857
Target:  5'- cCUGuGGGACCAGUuggaccuggauuugaAGGACCuacAGGACCAg -3'
miRNA:   3'- -GACcUCCUGGUCG---------------UCCUGG---UCCUGGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.