miRNA display CGI


Results 21 - 40 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31659 3' -59.6 NC_006883.1 + 23427 0.77 0.287501
Target:  5'- cCUGGuGGACCuGUAGGACCAucugguccaguuGGACCu -3'
miRNA:   3'- -GACCuCCUGGuCGUCCUGGU------------CCUGGu -5'
31659 3' -59.6 NC_006883.1 + 23441 0.68 0.765737
Target:  5'- uCUGGu---CCAGCAGGuccuCCAGGuCCAg -3'
miRNA:   3'- -GACCuccuGGUCGUCCu---GGUCCuGGU- -5'
31659 3' -59.6 NC_006883.1 + 23688 1.01 0.00833
Target:  5'- cCUGGAGGACCAGCAGGACCAGGuCCAc -3'
miRNA:   3'- -GACCUCCUGGUCGUCCUGGUCCuGGU- -5'
31659 3' -59.6 NC_006883.1 + 23731 0.79 0.218713
Target:  5'- -aGGAGGACCuGCuGGACCuggAGGACCu -3'
miRNA:   3'- gaCCUCCUGGuCGuCCUGG---UCCUGGu -5'
31659 3' -59.6 NC_006883.1 + 23929 0.73 0.472391
Target:  5'- uUGGAccaguuGGACCuGUAGGACCugcuGGACCu -3'
miRNA:   3'- gACCU------CCUGGuCGUCCUGGu---CCUGGu -5'
31659 3' -59.6 NC_006883.1 + 24961 0.69 0.710151
Target:  5'- aUGGAccacuuGGACCuGUAGGACCuggAGGAgCAa -3'
miRNA:   3'- gACCU------CCUGGuCGUCCUGG---UCCUgGU- -5'
31659 3' -59.6 NC_006883.1 + 25010 0.85 0.095566
Target:  5'- cCUGGAGGACCuGgAGGACCgcuAGGACCAc -3'
miRNA:   3'- -GACCUCCUGGuCgUCCUGG---UCCUGGU- -5'
31659 3' -59.6 NC_006883.1 + 26557 0.79 0.218713
Target:  5'- -aGGAGGACCuGCuGGACCuguAGGACCu -3'
miRNA:   3'- gaCCUCCUGGuCGuCCUGG---UCCUGGu -5'
31659 3' -59.6 NC_006883.1 + 26631 0.85 0.090874
Target:  5'- cCUGuGGGACCAGCAGGACCAguuGGACCu -3'
miRNA:   3'- -GACcUCCUGGUCGUCCUGGU---CCUGGu -5'
31659 3' -59.6 NC_006883.1 + 26667 0.81 0.17679
Target:  5'- cCUGGAGGACCGuCuGGACCAguuGGACCAg -3'
miRNA:   3'- -GACCUCCUGGUcGuCCUGGU---CCUGGU- -5'
31659 3' -59.6 NC_006883.1 + 26710 0.75 0.36454
Target:  5'- -aGGAGGACCuGCuGGACCuGGAguaCCAg -3'
miRNA:   3'- gaCCUCCUGGuCGuCCUGGuCCU---GGU- -5'
31659 3' -59.6 NC_006883.1 + 26793 0.9 0.042183
Target:  5'- cCUGGuGGACCAGCAGGACCAguuGGACCu -3'
miRNA:   3'- -GACCuCCUGGUCGUCCUGGU---CCUGGu -5'
31659 3' -59.6 NC_006883.1 + 26818 0.75 0.356977
Target:  5'- uUGG-GGACCAGCAGGACCAGu---- -3'
miRNA:   3'- gACCuCCUGGUCGUCCUGGUCcuggu -5'
31659 3' -59.6 NC_006883.1 + 26978 0.69 0.69106
Target:  5'- cCUGGAGaACCAGCAGGACCuuGuGAaacugauacCCAc -3'
miRNA:   3'- -GACCUCcUGGUCGUCCUGGu-C-CU---------GGU- -5'
31659 3' -59.6 NC_006883.1 + 27219 0.67 0.8256
Target:  5'- cCUGGuccuacAGGuCCAGCAGGuccuaCAGGuCCAu -3'
miRNA:   3'- -GACC------UCCuGGUCGUCCug---GUCCuGGU- -5'
31659 3' -59.6 NC_006883.1 + 27304 0.69 0.681443
Target:  5'- gUGGcacAGGuCCAGCAGGuccuCCAGGuCCu -3'
miRNA:   3'- gACC---UCCuGGUCGUCCu---GGUCCuGGu -5'
31659 3' -59.6 NC_006883.1 + 27372 0.7 0.642686
Target:  5'- aCUGGuacuccAGGuCCAGCAGGuccuCCAGGuCCu -3'
miRNA:   3'- -GACC------UCCuGGUCGUCCu---GGUCCuGGu -5'
31659 3' -59.6 NC_006883.1 + 27493 0.75 0.356977
Target:  5'- cCUGcuGGACCuGUAGGACCAGGAgCAc -3'
miRNA:   3'- -GACcuCCUGGuCGUCCUGGUCCUgGU- -5'
31659 3' -59.6 NC_006883.1 + 27538 0.81 0.160558
Target:  5'- cCUGGAGGACCAucuccaccuGUAGGACCugauGGACCu -3'
miRNA:   3'- -GACCUCCUGGU---------CGUCCUGGu---CCUGGu -5'
31659 3' -59.6 NC_006883.1 + 27583 0.8 0.188109
Target:  5'- cCUGGAGGACCuGCuGGACCugugccaccaccuGGACCAc -3'
miRNA:   3'- -GACCUCCUGGuCGuCCUGGu------------CCUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.