miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31659 3' -59.6 NC_006883.1 + 223080 0.66 0.84138
Target:  5'- ------cACCAGCAGGACCAGGAg-- -3'
miRNA:   3'- gaccuccUGGUCGUCCUGGUCCUggu -5'
31659 3' -59.6 NC_006883.1 + 223060 0.86 0.07612
Target:  5'- cCUGGAGGACCAaCAGGACCaccagaAGGACCAg -3'
miRNA:   3'- -GACCUCCUGGUcGUCCUGG------UCCUGGU- -5'
31659 3' -59.6 NC_006883.1 + 222992 0.72 0.527317
Target:  5'- -aGGcGaACCAGCAGGACCAGGugaACCu -3'
miRNA:   3'- gaCCuCcUGGUCGUCCUGGUCC---UGGu -5'
31659 3' -59.6 NC_006883.1 + 222963 0.84 0.101498
Target:  5'- gUGGAccaguuccaccagcaGGACCAGCAGGACCAGGAgaaCCAg -3'
miRNA:   3'- gACCU---------------CCUGGUCGUCCUGGUCCU---GGU- -5'
31659 3' -59.6 NC_006883.1 + 222920 0.77 0.28117
Target:  5'- -aGuAGGACCAGCAGGACCAGuaguACCAg -3'
miRNA:   3'- gaCcUCCUGGUCGUCCUGGUCc---UGGU- -5'
31659 3' -59.6 NC_006883.1 + 210951 0.67 0.815823
Target:  5'- uCUGGAuGACCAGaaucuacaaguGGACCAGuuGGCCAa -3'
miRNA:   3'- -GACCUcCUGGUCgu---------CCUGGUC--CUGGU- -5'
31659 3' -59.6 NC_006883.1 + 208989 0.66 0.870834
Target:  5'- -cGGuAGGGauuaCAGCAGGuucACUGGGACUAa -3'
miRNA:   3'- gaCC-UCCUg---GUCGUCC---UGGUCCUGGU- -5'
31659 3' -59.6 NC_006883.1 + 160570 0.77 0.287501
Target:  5'- gUGGAGGuCCAGCAGcaaGAUCAGGACUc -3'
miRNA:   3'- gACCUCCuGGUCGUC---CUGGUCCUGGu -5'
31659 3' -59.6 NC_006883.1 + 28551 0.77 0.305821
Target:  5'- cCUGGAGGACCAcuuccaccugaAGGACCuguuGGACCAg -3'
miRNA:   3'- -GACCUCCUGGUcg---------UCCUGGu---CCUGGU- -5'
31659 3' -59.6 NC_006883.1 + 28513 0.66 0.863748
Target:  5'- -aGuuGGACCAGUcGGACCAGuuCCAc -3'
miRNA:   3'- gaCcuCCUGGUCGuCCUGGUCcuGGU- -5'
31659 3' -59.6 NC_006883.1 + 28480 0.76 0.313942
Target:  5'- -aGGAGGACCaucuccaccAGUAGGACCuggagguccuggAGGACCAc -3'
miRNA:   3'- gaCCUCCUGG---------UCGUCCUGG------------UCCUGGU- -5'
31659 3' -59.6 NC_006883.1 + 28410 0.7 0.613514
Target:  5'- cCUGGAGGACCuGgAGGACCAcuuCCc -3'
miRNA:   3'- -GACCUCCUGGuCgUCCUGGUccuGGu -5'
31659 3' -59.6 NC_006883.1 + 28356 0.94 0.023801
Target:  5'- cCUGGAGGACCAGCAGGACCAguuccgccuGGACCu -3'
miRNA:   3'- -GACCUCCUGGUCGUCCUGGU---------CCUGGu -5'
31659 3' -59.6 NC_006883.1 + 28314 0.84 0.100486
Target:  5'- cCUGGAGGACCaucaucaccAGUAGGACCAguuGGACCAg -3'
miRNA:   3'- -GACCUCCUGG---------UCGUCCUGGU---CCUGGU- -5'
31659 3' -59.6 NC_006883.1 + 28254 0.84 0.100486
Target:  5'- cCUGGAGGACCaucuccaccAGUAGGACCagcAGGACCAg -3'
miRNA:   3'- -GACCUCCUGG---------UCGUCCUGG---UCCUGGU- -5'
31659 3' -59.6 NC_006883.1 + 28178 0.71 0.555672
Target:  5'- ---cAGcACCAGCAGGACCAguuGGACCAg -3'
miRNA:   3'- gaccUCcUGGUCGUCCUGGU---CCUGGU- -5'
31659 3' -59.6 NC_006883.1 + 28146 0.75 0.387887
Target:  5'- cCUGaAGGACCAGUuGGACCAguuGGACCu -3'
miRNA:   3'- -GACcUCCUGGUCGuCCUGGU---CCUGGu -5'
31659 3' -59.6 NC_006883.1 + 28092 0.81 0.164486
Target:  5'- cCUGGAGGACCAGCAGGACCuaaAUCu -3'
miRNA:   3'- -GACCUCCUGGUCGUCCUGGuccUGGu -5'
31659 3' -59.6 NC_006883.1 + 27745 0.73 0.454725
Target:  5'- cCUGuGGGACCAGUugguccuguGGGACCugucGGACCAg -3'
miRNA:   3'- -GACcUCCUGGUCG---------UCCUGGu---CCUGGU- -5'
31659 3' -59.6 NC_006883.1 + 27655 0.8 0.203869
Target:  5'- cCUGGAGGACCuGCuGGACCuGGAguaCCAg -3'
miRNA:   3'- -GACCUCCUGGuCGuCCUGGuCCU---GGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.