miRNA display CGI


Results 21 - 40 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31659 3' -59.6 NC_006883.1 + 23200 0.75 0.356977
Target:  5'- -aGGAGGACCAcuuGGACCaucAGGACCAg -3'
miRNA:   3'- gaCCUCCUGGUcguCCUGG---UCCUGGU- -5'
31659 3' -59.6 NC_006883.1 + 27493 0.75 0.356977
Target:  5'- cCUGcuGGACCuGUAGGACCAGGAgCAc -3'
miRNA:   3'- -GACcuCCUGGuCGUCCUGGUCCUgGU- -5'
31659 3' -59.6 NC_006883.1 + 26818 0.75 0.356977
Target:  5'- uUGG-GGACCAGCAGGACCAGu---- -3'
miRNA:   3'- gACCuCCUGGUCGUCCUGGUCcuggu -5'
31659 3' -59.6 NC_006883.1 + 22240 0.76 0.342184
Target:  5'- -aGcAGGACCAGgAGGACCAcuuGGACCAu -3'
miRNA:   3'- gaCcUCCUGGUCgUCCUGGU---CCUGGU- -5'
31659 3' -59.6 NC_006883.1 + 28480 0.76 0.313942
Target:  5'- -aGGAGGACCaucuccaccAGUAGGACCuggagguccuggAGGACCAc -3'
miRNA:   3'- gaCCUCCUGG---------UCGUCCUGG------------UCCUGGU- -5'
31659 3' -59.6 NC_006883.1 + 28551 0.77 0.305821
Target:  5'- cCUGGAGGACCAcuuccaccugaAGGACCuguuGGACCAg -3'
miRNA:   3'- -GACCUCCUGGUcg---------UCCUGGu---CCUGGU- -5'
31659 3' -59.6 NC_006883.1 + 23427 0.77 0.287501
Target:  5'- cCUGGuGGACCuGUAGGACCAucugguccaguuGGACCu -3'
miRNA:   3'- -GACCuCCUGGuCGUCCUGGU------------CCUGGu -5'
31659 3' -59.6 NC_006883.1 + 160570 0.77 0.287501
Target:  5'- gUGGAGGuCCAGCAGcaaGAUCAGGACUc -3'
miRNA:   3'- gACCUCCuGGUCGUC---CUGGUCCUGGu -5'
31659 3' -59.6 NC_006883.1 + 222920 0.77 0.28117
Target:  5'- -aGuAGGACCAGCAGGACCAGuaguACCAg -3'
miRNA:   3'- gaCcUCCUGGUCGUCCUGGUCc---UGGU- -5'
31659 3' -59.6 NC_006883.1 + 23731 0.79 0.218713
Target:  5'- -aGGAGGACCuGCuGGACCuggAGGACCu -3'
miRNA:   3'- gaCCUCCUGGuCGuCCUGG---UCCUGGu -5'
31659 3' -59.6 NC_006883.1 + 26557 0.79 0.218713
Target:  5'- -aGGAGGACCuGCuGGACCuguAGGACCu -3'
miRNA:   3'- gaCCUCCUGGuCGuCCUGG---UCCUGGu -5'
31659 3' -59.6 NC_006883.1 + 27655 0.8 0.203869
Target:  5'- cCUGGAGGACCuGCuGGACCuGGAguaCCAg -3'
miRNA:   3'- -GACCUCCUGGuCGuCCUGGuCCU---GGU- -5'
31659 3' -59.6 NC_006883.1 + 21769 0.8 0.194464
Target:  5'- cCUGGAGGACCAGaAGGACCAGuuauuCCAg -3'
miRNA:   3'- -GACCUCCUGGUCgUCCUGGUCcu---GGU- -5'
31659 3' -59.6 NC_006883.1 + 27583 0.8 0.188109
Target:  5'- cCUGGAGGACCuGCuGGACCugugccaccaccuGGACCAc -3'
miRNA:   3'- -GACCUCCUGGuCGuCCUGGu------------CCUGGU- -5'
31659 3' -59.6 NC_006883.1 + 26667 0.81 0.17679
Target:  5'- cCUGGAGGACCGuCuGGACCAguuGGACCAg -3'
miRNA:   3'- -GACCUCCUGGUcGuCCUGGU---CCUGGU- -5'
31659 3' -59.6 NC_006883.1 + 23286 0.81 0.17679
Target:  5'- cCUGGAGGACCuugAGGACCAGGAgCAc -3'
miRNA:   3'- -GACCUCCUGGucgUCCUGGUCCUgGU- -5'
31659 3' -59.6 NC_006883.1 + 28092 0.81 0.164486
Target:  5'- cCUGGAGGACCAGCAGGACCuaaAUCu -3'
miRNA:   3'- -GACCUCCUGGUCGUCCUGGuccUGGu -5'
31659 3' -59.6 NC_006883.1 + 27538 0.81 0.160558
Target:  5'- cCUGGAGGACCAucuccaccuGUAGGACCugauGGACCu -3'
miRNA:   3'- -GACCUCCUGGU---------CGUCCUGGu---CCUGGu -5'
31659 3' -59.6 NC_006883.1 + 21857 0.81 0.156716
Target:  5'- -aGcAGGuCCAGUAGGACCAGGACCAc -3'
miRNA:   3'- gaCcUCCuGGUCGUCCUGGUCCUGGU- -5'
31659 3' -59.6 NC_006883.1 + 22149 0.82 0.142165
Target:  5'- cCUGGAGGACCAGguGaACCAcuuGGACCAg -3'
miRNA:   3'- -GACCUCCUGGUCguCcUGGU---CCUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.