Results 1 - 20 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31659 | 5' | -56.6 | NC_006883.1 | + | 22171 | 1.13 | 0.002848 |
Target: 5'- aCCUGGAGGACCACCACUAGGACCUGGa -3' miRNA: 3'- -GGACCUCCUGGUGGUGAUCCUGGACC- -5' |
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31659 | 5' | -56.6 | NC_006883.1 | + | 25011 | 0.91 | 0.069584 |
Target: 5'- aCCUGGAGGACCuggaggACCGCUAGGACCacuUGGa -3' miRNA: 3'- -GGACCUCCUGG------UGGUGAUCCUGG---ACC- -5' |
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31659 | 5' | -56.6 | NC_006883.1 | + | 22096 | 0.91 | 0.069584 |
Target: 5'- aCCUGGAGGACCACUuggACcaggAGGACCUGGa -3' miRNA: 3'- -GGACCUCCUGGUGG---UGa---UCCUGGACC- -5' |
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31659 | 5' | -56.6 | NC_006883.1 | + | 23233 | 0.91 | 0.069584 |
Target: 5'- aCCUGGAGGACCACCAgcAGGACCaGGa -3' miRNA: 3'- -GGACCUCCUGGUGGUgaUCCUGGaCC- -5' |
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31659 | 5' | -56.6 | NC_006883.1 | + | 27539 | 0.91 | 0.073227 |
Target: 5'- aCCUGGAGGACCaucuccACCugUAGGACCUGa -3' miRNA: 3'- -GGACCUCCUGG------UGGugAUCCUGGACc -5' |
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31659 | 5' | -56.6 | NC_006883.1 | + | 21889 | 0.88 | 0.112441 |
Target: 5'- aCCUGGAGGACCACCAgcAGGACCagaGGa -3' miRNA: 3'- -GGACCUCCUGGUGGUgaUCCUGGa--CC- -5' |
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31659 | 5' | -56.6 | NC_006883.1 | + | 27656 | 0.87 | 0.124191 |
Target: 5'- aCCUGGAGGACCugCu---GGACCUGGa -3' miRNA: 3'- -GGACCUCCUGGugGugauCCUGGACC- -5' |
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31659 | 5' | -56.6 | NC_006883.1 | + | 28483 | 0.86 | 0.140478 |
Target: 5'- aCCaGGAGGACCaucuccACCAgUAGGACCUGGa -3' miRNA: 3'- -GGaCCUCCUGG------UGGUgAUCCUGGACC- -5' |
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31659 | 5' | -56.6 | NC_006883.1 | + | 28315 | 0.86 | 0.147525 |
Target: 5'- aCCUGGAGGACCAUCAUcaccagUAGGACCaguUGGa -3' miRNA: 3'- -GGACCUCCUGGUGGUG------AUCCUGG---ACC- -5' |
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31659 | 5' | -56.6 | NC_006883.1 | + | 28357 | 0.85 | 0.162592 |
Target: 5'- uCCUGGAGGACCAgcaggaccaguuCCGCcuGGACCUGGa -3' miRNA: 3'- -GGACCUCCUGGU------------GGUGauCCUGGACC- -5' |
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31659 | 5' | -56.6 | NC_006883.1 | + | 28552 | 0.85 | 0.16657 |
Target: 5'- aCCUGGAGGACCAcuuCCACcugaAGGACCUGu -3' miRNA: 3'- -GGACCUCCUGGU---GGUGa---UCCUGGACc -5' |
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31659 | 5' | -56.6 | NC_006883.1 | + | 21770 | 0.85 | 0.176474 |
Target: 5'- aCCUGGAGGACCAgaaggaccaguuauuCCAgUuGGACCUGGa -3' miRNA: 3'- -GGACCUCCUGGU---------------GGUgAuCCUGGACC- -5' |
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31659 | 5' | -56.6 | NC_006883.1 | + | 23716 | 0.84 | 0.187791 |
Target: 5'- aCCUGGAGGACCugcuggACCAgauGGACCUGGa -3' miRNA: 3'- -GGACCUCCUGG------UGGUgauCCUGGACC- -5' |
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31659 | 5' | -56.6 | NC_006883.1 | + | 28255 | 0.83 | 0.232003 |
Target: 5'- aCCUGGAGGACCaucuccACCAgUAGGACCa-- -3' miRNA: 3'- -GGACCUCCUGG------UGGUgAUCCUGGacc -5' |
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31659 | 5' | -56.6 | NC_006883.1 | + | 28447 | 0.82 | 0.262541 |
Target: 5'- uCCUGGAGGACCacuuccuccaucagaACCAUcagaaccuggAGGACCUGGa -3' miRNA: 3'- -GGACCUCCUGG---------------UGGUGa---------UCCUGGACC- -5' |
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31659 | 5' | -56.6 | NC_006883.1 | + | 27584 | 0.81 | 0.284664 |
Target: 5'- aCCUGGAGGACCugCu---GGACCUGu -3' miRNA: 3'- -GGACCUCCUGGugGugauCCUGGACc -5' |
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31659 | 5' | -56.6 | NC_006883.1 | + | 26560 | 0.81 | 0.291065 |
Target: 5'- uCCaGGAGGACCugcuggACCugUAGGACCUGc -3' miRNA: 3'- -GGaCCUCCUGG------UGGugAUCCUGGACc -5' |
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31659 | 5' | -56.6 | NC_006883.1 | + | 223061 | 0.81 | 0.304205 |
Target: 5'- aCCUGGAGGACCaacaggACCACcagaaggaccagUAGGACCaGGa -3' miRNA: 3'- -GGACCUCCUGG------UGGUG------------AUCCUGGaCC- -5' |
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31659 | 5' | -56.6 | NC_006883.1 | + | 24972 | 0.8 | 0.32476 |
Target: 5'- aCUUGGAccugauGGACCacuuggACCugUAGGACCUGGa -3' miRNA: 3'- -GGACCU------CCUGG------UGGugAUCCUGGACC- -5' |
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31659 | 5' | -56.6 | NC_006883.1 | + | 22234 | 0.79 | 0.353744 |
Target: 5'- aCCaGGAGGACCACUuggaccauCU-GGACCUGGa -3' miRNA: 3'- -GGaCCUCCUGGUGGu-------GAuCCUGGACC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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