miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31659 5' -56.6 NC_006883.1 + 15375 0.69 0.861205
Target:  5'- aCUUGGAaaauguuauaguGGACCuCCAUUAGGAUgugCUGGu -3'
miRNA:   3'- -GGACCU------------CCUGGuGGUGAUCCUG---GACC- -5'
31659 5' -56.6 NC_006883.1 + 21770 0.85 0.176474
Target:  5'- aCCUGGAGGACCAgaaggaccaguuauuCCAgUuGGACCUGGa -3'
miRNA:   3'- -GGACCUCCUGGU---------------GGUgAuCCUGGACC- -5'
31659 5' -56.6 NC_006883.1 + 21800 0.67 0.938343
Target:  5'- --aGGAccaGGACCGCCACcuGGACCa-- -3'
miRNA:   3'- ggaCCU---CCUGGUGGUGauCCUGGacc -5'
31659 5' -56.6 NC_006883.1 + 21845 0.73 0.677762
Target:  5'- --aGGAccaGGACCACCACUcGGACCa-- -3'
miRNA:   3'- ggaCCU---CCUGGUGGUGAuCCUGGacc -5'
31659 5' -56.6 NC_006883.1 + 21889 0.88 0.112441
Target:  5'- aCCUGGAGGACCACCAgcAGGACCagaGGa -3'
miRNA:   3'- -GGACCUCCUGGUGGUgaUCCUGGa--CC- -5'
31659 5' -56.6 NC_006883.1 + 21943 0.69 0.882112
Target:  5'- aCCaGGAGGACCAgUu---GGACCUGu -3'
miRNA:   3'- -GGaCCUCCUGGUgGugauCCUGGACc -5'
31659 5' -56.6 NC_006883.1 + 21999 0.72 0.753318
Target:  5'- gUUGGAccaGGACCuCCACUuGGACCaGGa -3'
miRNA:   3'- gGACCU---CCUGGuGGUGAuCCUGGaCC- -5'
31659 5' -56.6 NC_006883.1 + 22065 0.72 0.753318
Target:  5'- ---nGAGGACCACCAgcAGGACCaguUGGa -3'
miRNA:   3'- ggacCUCCUGGUGGUgaUCCUGG---ACC- -5'
31659 5' -56.6 NC_006883.1 + 22096 0.91 0.069584
Target:  5'- aCCUGGAGGACCACUuggACcaggAGGACCUGGa -3'
miRNA:   3'- -GGACCUCCUGGUGG---UGa---UCCUGGACC- -5'
31659 5' -56.6 NC_006883.1 + 22171 1.13 0.002848
Target:  5'- aCCUGGAGGACCACCACUAGGACCUGGa -3'
miRNA:   3'- -GGACCUCCUGGUGGUGAUCCUGGACC- -5'
31659 5' -56.6 NC_006883.1 + 22234 0.79 0.353744
Target:  5'- aCCaGGAGGACCACUuggaccauCU-GGACCUGGa -3'
miRNA:   3'- -GGaCCUCCUGGUGGu-------GAuCCUGGACC- -5'
31659 5' -56.6 NC_006883.1 + 23158 0.75 0.590303
Target:  5'- aCCUGGAGcACCagcaggACCAgUuGGACCUGGa -3'
miRNA:   3'- -GGACCUCcUGG------UGGUgAuCCUGGACC- -5'
31659 5' -56.6 NC_006883.1 + 23203 0.71 0.780273
Target:  5'- aCCaGGAGGACCacuuggACCAUcAGGACCa-- -3'
miRNA:   3'- -GGaCCUCCUGG------UGGUGaUCCUGGacc -5'
31659 5' -56.6 NC_006883.1 + 23233 0.91 0.069584
Target:  5'- aCCUGGAGGACCACCAgcAGGACCaGGa -3'
miRNA:   3'- -GGACCUCCUGGUGGUgaUCCUGGaCC- -5'
31659 5' -56.6 NC_006883.1 + 23287 0.74 0.629179
Target:  5'- aCCUGGAGGACCuug---AGGACCaGGa -3'
miRNA:   3'- -GGACCUCCUGGuggugaUCCUGGaCC- -5'
31659 5' -56.6 NC_006883.1 + 23365 0.75 0.561413
Target:  5'- aCCUGGAuuugaaGGACCuacaggACCAgUuGGACCUGGa -3'
miRNA:   3'- -GGACCU------CCUGG------UGGUgAuCCUGGACC- -5'
31659 5' -56.6 NC_006883.1 + 23419 0.76 0.517938
Target:  5'- aCCUGuAGGACCaucugguccaguuggACCugUGGGACCUGu -3'
miRNA:   3'- -GGACcUCCUGG---------------UGGugAUCCUGGACc -5'
31659 5' -56.6 NC_006883.1 + 23716 0.84 0.187791
Target:  5'- aCCUGGAGGACCugcuggACCAgauGGACCUGGa -3'
miRNA:   3'- -GGACCUCCUGG------UGGUgauCCUGGACC- -5'
31659 5' -56.6 NC_006883.1 + 23916 0.69 0.868368
Target:  5'- aCCUGuAGGACCugCu---GGACCUGu -3'
miRNA:   3'- -GGACcUCCUGGugGugauCCUGGACc -5'
31659 5' -56.6 NC_006883.1 + 24972 0.8 0.32476
Target:  5'- aCUUGGAccugauGGACCacuuggACCugUAGGACCUGGa -3'
miRNA:   3'- -GGACCU------CCUGG------UGGugAUCCUGGACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.