miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31659 5' -56.6 NC_006883.1 + 223061 0.81 0.304205
Target:  5'- aCCUGGAGGACCaacaggACCACcagaaggaccagUAGGACCaGGa -3'
miRNA:   3'- -GGACCUCCUGG------UGGUG------------AUCCUGGaCC- -5'
31659 5' -56.6 NC_006883.1 + 213907 0.67 0.942784
Target:  5'- aCUGGuaAGGACCACCAUugUAGaGCCa-- -3'
miRNA:   3'- gGACC--UCCUGGUGGUG--AUCcUGGacc -5'
31659 5' -56.6 NC_006883.1 + 212118 0.66 0.964728
Target:  5'- uUCUGGuGGAUauggaUACUuaaguagAGGACCUGGa -3'
miRNA:   3'- -GGACCuCCUGgug--GUGA-------UCCUGGACC- -5'
31659 5' -56.6 NC_006883.1 + 211620 0.69 0.888685
Target:  5'- uCCUGGugcuacucuAGGACCACCACUccaaGAuCCUGc -3'
miRNA:   3'- -GGACC---------UCCUGGUGGUGAuc--CU-GGACc -5'
31659 5' -56.6 NC_006883.1 + 112315 0.68 0.906576
Target:  5'- aCUGGuGGAUCuggugguGCUACUGguGGAUCUGGu -3'
miRNA:   3'- gGACCuCCUGG-------UGGUGAU--CCUGGACC- -5'
31659 5' -56.6 NC_006883.1 + 28552 0.85 0.16657
Target:  5'- aCCUGGAGGACCAcuuCCACcugaAGGACCUGu -3'
miRNA:   3'- -GGACCUCCUGGU---GGUGa---UCCUGGACc -5'
31659 5' -56.6 NC_006883.1 + 28483 0.86 0.140478
Target:  5'- aCCaGGAGGACCaucuccACCAgUAGGACCUGGa -3'
miRNA:   3'- -GGaCCUCCUGG------UGGUgAUCCUGGACC- -5'
31659 5' -56.6 NC_006883.1 + 28447 0.82 0.262541
Target:  5'- uCCUGGAGGACCacuuccuccaucagaACCAUcagaaccuggAGGACCUGGa -3'
miRNA:   3'- -GGACCUCCUGG---------------UGGUGa---------UCCUGGACC- -5'
31659 5' -56.6 NC_006883.1 + 28357 0.85 0.162592
Target:  5'- uCCUGGAGGACCAgcaggaccaguuCCGCcuGGACCUGGa -3'
miRNA:   3'- -GGACCUCCUGGU------------GGUGauCCUGGACC- -5'
31659 5' -56.6 NC_006883.1 + 28315 0.86 0.147525
Target:  5'- aCCUGGAGGACCAUCAUcaccagUAGGACCaguUGGa -3'
miRNA:   3'- -GGACCUCCUGGUGGUG------AUCCUGG---ACC- -5'
31659 5' -56.6 NC_006883.1 + 28255 0.83 0.232003
Target:  5'- aCCUGGAGGACCaucuccACCAgUAGGACCa-- -3'
miRNA:   3'- -GGACCUCCUGG------UGGUgAUCCUGGacc -5'
31659 5' -56.6 NC_006883.1 + 28147 0.69 0.878072
Target:  5'- aCCUGaAGGACCaguuggaccaguuggACCugUAGGuCCUGu -3'
miRNA:   3'- -GGACcUCCUGG---------------UGGugAUCCuGGACc -5'
31659 5' -56.6 NC_006883.1 + 28093 0.76 0.495786
Target:  5'- aCCUGGAGGACCA--GC-AGGACCUa- -3'
miRNA:   3'- -GGACCUCCUGGUggUGaUCCUGGAcc -5'
31659 5' -56.6 NC_006883.1 + 27746 0.77 0.442431
Target:  5'- aCCUGuGGGACCAguugguCCugUGGGACCUGu -3'
miRNA:   3'- -GGACcUCCUGGU------GGugAUCCUGGACc -5'
31659 5' -56.6 NC_006883.1 + 27656 0.87 0.124191
Target:  5'- aCCUGGAGGACCugCu---GGACCUGGa -3'
miRNA:   3'- -GGACCUCCUGGugGugauCCUGGACC- -5'
31659 5' -56.6 NC_006883.1 + 27584 0.81 0.284664
Target:  5'- aCCUGGAGGACCugCu---GGACCUGu -3'
miRNA:   3'- -GGACCUCCUGGugGugauCCUGGACc -5'
31659 5' -56.6 NC_006883.1 + 27539 0.91 0.073227
Target:  5'- aCCUGGAGGACCaucuccACCugUAGGACCUGa -3'
miRNA:   3'- -GGACCUCCUGG------UGGugAUCCUGGACc -5'
31659 5' -56.6 NC_006883.1 + 27503 0.76 0.504965
Target:  5'- aCCUGuAGGACCugcuggACCugUAGGACCaGGa -3'
miRNA:   3'- -GGACcUCCUGG------UGGugAUCCUGGaCC- -5'
31659 5' -56.6 NC_006883.1 + 26988 0.69 0.868368
Target:  5'- aCCaGGAGGACCuggagaACCAgcAGGACCUu- -3'
miRNA:   3'- -GGaCCUCCUGG------UGGUgaUCCUGGAcc -5'
31659 5' -56.6 NC_006883.1 + 26794 0.73 0.658379
Target:  5'- aCCUGGuGGACCagcaggACCAgUuGGACCUGc -3'
miRNA:   3'- -GGACCuCCUGG------UGGUgAuCCUGGACc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.