miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31660 3' -57.1 NC_006883.1 + 23302 0.66 0.94842
Target:  5'- aGUUGGACCaccgauaccUG-GaGGACCU-UGaGGACCa -3'
miRNA:   3'- -CAACCUGG---------ACaC-CCUGGAcAC-CCUGG- -5'
31660 3' -57.1 NC_006883.1 + 26672 0.66 0.944235
Target:  5'- -cUGGACCUG-GaGGACC-GUcuGGACCn -3'
miRNA:   3'- caACCUGGACaC-CCUGGaCAc-CCUGG- -5'
31660 3' -57.1 NC_006883.1 + 26773 0.68 0.890408
Target:  5'- aGUUGGACCUGcaGGACCaGUugcaccagcaGGACCa -3'
miRNA:   3'- -CAACCUGGACacCCUGGaCAc---------CCUGG- -5'
31660 3' -57.1 NC_006883.1 + 223073 0.68 0.883843
Target:  5'- --aGGACCaG-GaGGACCUG-GaGGACCa -3'
miRNA:   3'- caaCCUGGaCaC-CCUGGACaC-CCUGG- -5'
31660 3' -57.1 NC_006883.1 + 28459 0.68 0.862936
Target:  5'- --aGGACCUG-GaGGuCCUG-GaGGACCa -3'
miRNA:   3'- caaCCUGGACaC-CCuGGACaC-CCUGG- -5'
31660 3' -57.1 NC_006883.1 + 27543 0.69 0.855579
Target:  5'- -cUGGACCUG-GaGGACCaucuccaccUGUaGGACCu -3'
miRNA:   3'- caACCUGGACaC-CCUGG---------ACAcCCUGG- -5'
31660 3' -57.1 NC_006883.1 + 23693 0.69 0.848035
Target:  5'- -aUGGACCUG-GaGGACCaGcaGGACCa -3'
miRNA:   3'- caACCUGGACaC-CCUGGaCacCCUGG- -5'
31660 3' -57.1 NC_006883.1 + 22174 0.69 0.833211
Target:  5'- --aGGACCUGgaggaccaccacuaGGACCUG-GaGGACCa -3'
miRNA:   3'- caaCCUGGACac------------CCUGGACaC-CCUGG- -5'
31660 3' -57.1 NC_006883.1 + 22221 0.69 0.824349
Target:  5'- cUUGGACCaucuGGACCUG-GaGGACCa -3'
miRNA:   3'- cAACCUGGacacCCUGGACaC-CCUGG- -5'
31660 3' -57.1 NC_006883.1 + 21981 0.69 0.816124
Target:  5'- cUUGGACCaG-GaGGACCUGcaGGACCa -3'
miRNA:   3'- cAACCUGGaCaC-CCUGGACacCCUGG- -5'
31660 3' -57.1 NC_006883.1 + 21783 0.69 0.816124
Target:  5'- -cUGGACCaGaaGGACCUG-GaGGACCa -3'
miRNA:   3'- caACCUGGaCacCCUGGACaC-CCUGG- -5'
31660 3' -57.1 NC_006883.1 + 22083 0.71 0.745429
Target:  5'- cUUGGACCaG-GaGGACCUG-GaGGACCa -3'
miRNA:   3'- cAACCUGGaCaC-CCUGGACaC-CCUGG- -5'
31660 3' -57.1 NC_006883.1 + 23245 0.71 0.707638
Target:  5'- --aGGACCaGUuGGACCUG-GaGGACCa -3'
miRNA:   3'- caaCCUGGaCAcCCUGGACaC-CCUGG- -5'
31660 3' -57.1 NC_006883.1 + 28099 0.72 0.698023
Target:  5'- aGUUGGACCUG-GaGGACCaGcaGGACCu -3'
miRNA:   3'- -CAACCUGGACaC-CCUGGaCacCCUGG- -5'
31660 3' -57.1 NC_006883.1 + 21901 0.72 0.688357
Target:  5'- --cGGACCU-UGcGGACCUG-GaGGACCa -3'
miRNA:   3'- caaCCUGGAcAC-CCUGGACaC-CCUGG- -5'
31660 3' -57.1 NC_006883.1 + 23338 0.72 0.686419
Target:  5'- aGUUGGACCUGgagaaccagcaGGACCU-UGaGGACCa -3'
miRNA:   3'- -CAACCUGGACac---------CCUGGAcAC-CCUGG- -5'
31660 3' -57.1 NC_006883.1 + 21740 0.73 0.649344
Target:  5'- aGUUGGACCUG-GaGGACCaGcaGGACCa -3'
miRNA:   3'- -CAACCUGGACaC-CCUGGaCacCCUGG- -5'
31660 3' -57.1 NC_006883.1 + 26800 0.73 0.649344
Target:  5'- aGUUGGACCUG-GuGGACCaGcaGGACCa -3'
miRNA:   3'- -CAACCUGGACaC-CCUGGaCacCCUGG- -5'
31660 3' -57.1 NC_006883.1 + 27659 0.73 0.610126
Target:  5'- --aGGACCUG-GaGGACCUGcuGGACCu -3'
miRNA:   3'- caaCCUGGACaC-CCUGGACacCCUGG- -5'
31660 3' -57.1 NC_006883.1 + 28268 0.73 0.600342
Target:  5'- -cUGGACCaGUuGGACCUG-GaGGACCa -3'
miRNA:   3'- caACCUGGaCAcCCUGGACaC-CCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.