Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31660 | 3' | -57.1 | NC_006883.1 | + | 223073 | 0.68 | 0.883843 |
Target: 5'- --aGGACCaG-GaGGACCUG-GaGGACCa -3' miRNA: 3'- caaCCUGGaCaC-CCUGGACaC-CCUGG- -5' |
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31660 | 3' | -57.1 | NC_006883.1 | + | 28528 | 0.75 | 0.504647 |
Target: 5'- --aGGACCUGUuGGACCaGUuGGACCa -3' miRNA: 3'- caaCCUGGACAcCCUGGaCAcCCUGG- -5' |
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31660 | 3' | -57.1 | NC_006883.1 | + | 28459 | 0.68 | 0.862936 |
Target: 5'- --aGGACCUG-GaGGuCCUG-GaGGACCa -3' miRNA: 3'- caaCCUGGACaC-CCuGGACaC-CCUGG- -5' |
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31660 | 3' | -57.1 | NC_006883.1 | + | 28328 | 0.78 | 0.375563 |
Target: 5'- -cUGGACCUG-GaGGACCUG-GaGGACCa -3' miRNA: 3'- caACCUGGACaC-CCUGGACaC-CCUGG- -5' |
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31660 | 3' | -57.1 | NC_006883.1 | + | 28268 | 0.73 | 0.600342 |
Target: 5'- -cUGGACCaGUuGGACCUG-GaGGACCa -3' miRNA: 3'- caACCUGGaCAcCCUGGACaC-CCUGG- -5' |
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31660 | 3' | -57.1 | NC_006883.1 | + | 28126 | 0.82 | 0.225105 |
Target: 5'- aGUUGGACCUGUaGGuCCUGUaGGACCa -3' miRNA: 3'- -CAACCUGGACAcCCuGGACAcCCUGG- -5' |
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31660 | 3' | -57.1 | NC_006883.1 | + | 28099 | 0.72 | 0.698023 |
Target: 5'- aGUUGGACCUG-GaGGACCaGcaGGACCu -3' miRNA: 3'- -CAACCUGGACaC-CCUGGaCacCCUGG- -5' |
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31660 | 3' | -57.1 | NC_006883.1 | + | 27752 | 0.99 | 0.018038 |
Target: 5'- aGUUGGACCUGUGGGACCaguugguccUGUGGGACCu -3' miRNA: 3'- -CAACCUGGACACCCUGG---------ACACCCUGG- -5' |
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31660 | 3' | -57.1 | NC_006883.1 | + | 27659 | 0.73 | 0.610126 |
Target: 5'- --aGGACCUG-GaGGACCUGcuGGACCu -3' miRNA: 3'- caaCCUGGACaC-CCUGGACacCCUGG- -5' |
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31660 | 3' | -57.1 | NC_006883.1 | + | 27578 | 0.75 | 0.513961 |
Target: 5'- --aGGACCUGcuGGACCUGUGccaccaccuGGACCa -3' miRNA: 3'- caaCCUGGACacCCUGGACAC---------CCUGG- -5' |
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31660 | 3' | -57.1 | NC_006883.1 | + | 27543 | 0.69 | 0.855579 |
Target: 5'- -cUGGACCUG-GaGGACCaucuccaccUGUaGGACCu -3' miRNA: 3'- caACCUGGACaC-CCUGG---------ACAcCCUGG- -5' |
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31660 | 3' | -57.1 | NC_006883.1 | + | 27507 | 0.79 | 0.316442 |
Target: 5'- -aUGGACCUGUaGGACCUGcuGGACCu -3' miRNA: 3'- caACCUGGACAcCCUGGACacCCUGG- -5' |
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31660 | 3' | -57.1 | NC_006883.1 | + | 26800 | 0.73 | 0.649344 |
Target: 5'- aGUUGGACCUG-GuGGACCaGcaGGACCa -3' miRNA: 3'- -CAACCUGGACaC-CCUGGaCacCCUGG- -5' |
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31660 | 3' | -57.1 | NC_006883.1 | + | 26773 | 0.68 | 0.890408 |
Target: 5'- aGUUGGACCUGcaGGACCaGUugcaccagcaGGACCa -3' miRNA: 3'- -CAACCUGGACacCCUGGaCAc---------CCUGG- -5' |
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31660 | 3' | -57.1 | NC_006883.1 | + | 26672 | 0.66 | 0.944235 |
Target: 5'- -cUGGACCUG-GaGGACC-GUcuGGACCn -3' miRNA: 3'- caACCUGGACaC-CCUGGaCAc-CCUGG- -5' |
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31660 | 3' | -57.1 | NC_006883.1 | + | 26647 | 0.79 | 0.33776 |
Target: 5'- aGUUGGACCaGUuccACCUGUGGGACCa -3' miRNA: 3'- -CAACCUGGaCAcccUGGACACCCUGG- -5' |
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31660 | 3' | -57.1 | NC_006883.1 | + | 26546 | 0.8 | 0.296155 |
Target: 5'- -cUGGACCUGUaGGACCUGcuGGACCa -3' miRNA: 3'- caACCUGGACAcCCUGGACacCCUGG- -5' |
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31660 | 3' | -57.1 | NC_006883.1 | + | 25017 | 0.82 | 0.230427 |
Target: 5'- uGUUGGACCUG-GaGGACCUG-GaGGACCg -3' miRNA: 3'- -CAACCUGGACaC-CCUGGACaC-CCUGG- -5' |
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31660 | 3' | -57.1 | NC_006883.1 | + | 24971 | 0.76 | 0.459252 |
Target: 5'- cUUGGACCUGaUGgaccacuuGGACCUGUaGGACCu -3' miRNA: 3'- cAACCUGGAC-AC--------CCUGGACAcCCUGG- -5' |
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31660 | 3' | -57.1 | NC_006883.1 | + | 23922 | 0.83 | 0.190716 |
Target: 5'- aGUUGGACCUGUaGGACCUGcuGGACCu -3' miRNA: 3'- -CAACCUGGACAcCCUGGACacCCUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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