miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31660 5' -50.5 NC_006883.1 + 23363 1.09 0.015314
Target:  5'- cUGGAUUUGAAGGACCUACAGGACCAGu -3'
miRNA:   3'- -ACCUAAACUUCCUGGAUGUCCUGGUC- -5'
31660 5' -50.5 NC_006883.1 + 21980 0.94 0.116178
Target:  5'- uUGGAccaGGAGGACCUGCAGGACCAGg -3'
miRNA:   3'- -ACCUaaaCUUCCUGGAUGUCCUGGUC- -5'
31660 5' -50.5 NC_006883.1 + 23693 0.91 0.185207
Target:  5'- aUGGAccUGGAGGACCaGCAGGACCAGg -3'
miRNA:   3'- -ACCUaaACUUCCUGGaUGUCCUGGUC- -5'
31660 5' -50.5 NC_006883.1 + 22211 0.9 0.194799
Target:  5'- cUGGAccUGGAGGACCaGCAGGACCAGg -3'
miRNA:   3'- -ACCUaaACUUCCUGGaUGUCCUGGUC- -5'
31660 5' -50.5 NC_006883.1 + 21738 0.89 0.226215
Target:  5'- uUGGAccUGGAGGACCaGCAGGACCAGu -3'
miRNA:   3'- -ACCUaaACUUCCUGGaUGUCCUGGUC- -5'
31660 5' -50.5 NC_006883.1 + 23720 0.88 0.24947
Target:  5'- cUGGAccUGGAGGACCUGCuGGACCAGn -3'
miRNA:   3'- -ACCUaaACUUCCUGGAUGuCCUGGUC- -5'
31660 5' -50.5 NC_006883.1 + 28363 0.87 0.30897
Target:  5'- aGGAgguccUGGAGGACCaGCAGGACCAGu -3'
miRNA:   3'- aCCUaa---ACUUCCUGGaUGUCCUGGUC- -5'
31660 5' -50.5 NC_006883.1 + 21783 0.86 0.316212
Target:  5'- cUGGAccaGAAGGACCUGgAGGACCAGa -3'
miRNA:   3'- -ACCUaaaCUUCCUGGAUgUCCUGGUC- -5'
31660 5' -50.5 NC_006883.1 + 23237 0.86 0.331076
Target:  5'- uUGGAccUGGAGGACCaccaGCAGGACCAGg -3'
miRNA:   3'- -ACCUaaACUUCCUGGa---UGUCCUGGUC- -5'
31660 5' -50.5 NC_006883.1 + 28328 0.85 0.370451
Target:  5'- cUGGAccUGGAGGACCUGgAGGACCAu -3'
miRNA:   3'- -ACCUaaACUUCCUGGAUgUCCUGGUc -5'
31660 5' -50.5 NC_006883.1 + 21892 0.85 0.370451
Target:  5'- cGGAccUGGAGGACCaccaGCAGGACCAGa -3'
miRNA:   3'- aCCUaaACUUCCUGGa---UGUCCUGGUC- -5'
31660 5' -50.5 NC_006883.1 + 23300 0.84 0.411151
Target:  5'- uUGGAccaccgauaccUGGAGGACCUugAGGACCAGg -3'
miRNA:   3'- -ACCUaa---------ACUUCCUGGAugUCCUGGUC- -5'
31660 5' -50.5 NC_006883.1 + 22072 0.84 0.421751
Target:  5'- aGGAccUGGAGGACCaccaGCAGGACCAGu -3'
miRNA:   3'- aCCUaaACUUCCUGGa---UGUCCUGGUC- -5'
31660 5' -50.5 NC_006883.1 + 25015 0.84 0.430709
Target:  5'- uUGGAccUGGAGGACCUGgAGGACCGc -3'
miRNA:   3'- -ACCUaaACUUCCUGGAUgUCCUGGUc -5'
31660 5' -50.5 NC_006883.1 + 223064 0.84 0.430709
Target:  5'- aGGAccUGGAGGACCaACAGGACCAc -3'
miRNA:   3'- aCCUaaACUUCCUGGaUGUCCUGGUc -5'
31660 5' -50.5 NC_006883.1 + 26779 0.83 0.439778
Target:  5'- aGGAccaGuuGGACCUGCAGGACCAGu -3'
miRNA:   3'- aCCUaaaCuuCCUGGAUGUCCUGGUC- -5'
31660 5' -50.5 NC_006883.1 + 27659 0.83 0.4771
Target:  5'- aGGAccUGGAGGACCUGCuGGACCuGg -3'
miRNA:   3'- aCCUaaACUUCCUGGAUGuCCUGGuC- -5'
31660 5' -50.5 NC_006883.1 + 28097 0.82 0.506091
Target:  5'- uUGGAccUGGAGGACCaGCAGGACCu- -3'
miRNA:   3'- -ACCUaaACUUCCUGGaUGUCCUGGuc -5'
31660 5' -50.5 NC_006883.1 + 27587 0.82 0.515922
Target:  5'- aGGAccUGGAGGACCUGCuGGACCu- -3'
miRNA:   3'- aCCUaaACUUCCUGGAUGuCCUGGuc -5'
31660 5' -50.5 NC_006883.1 + 22169 0.8 0.638147
Target:  5'- cUGGAg--GAccaccacuAGGACCUGgAGGACCAGg -3'
miRNA:   3'- -ACCUaaaCU--------UCCUGGAUgUCCUGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.