miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31660 5' -50.5 NC_006883.1 + 19055 0.67 0.997849
Target:  5'- aGGAcUUUGAuaucuuccucuAGGACCUucguuggaAGGACCAa -3'
miRNA:   3'- aCCU-AAACU-----------UCCUGGAug------UCCUGGUc -5'
31660 5' -50.5 NC_006883.1 + 21738 0.89 0.226215
Target:  5'- uUGGAccUGGAGGACCaGCAGGACCAGu -3'
miRNA:   3'- -ACCUaaACUUCCUGGaUGUCCUGGUC- -5'
31660 5' -50.5 NC_006883.1 + 21748 0.66 0.999148
Target:  5'- cUGGuccUGcuGGuCCUACGGGuCCAGa -3'
miRNA:   3'- -ACCuaaACuuCCuGGAUGUCCuGGUC- -5'
31660 5' -50.5 NC_006883.1 + 21783 0.86 0.316212
Target:  5'- cUGGAccaGAAGGACCUGgAGGACCAGa -3'
miRNA:   3'- -ACCUaaaCUUCCUGGAUgUCCUGGUC- -5'
31660 5' -50.5 NC_006883.1 + 21813 0.74 0.899402
Target:  5'- ----cUUG-AGGGCCaGCAGGACCAGg -3'
miRNA:   3'- accuaAACuUCCUGGaUGUCCUGGUC- -5'
31660 5' -50.5 NC_006883.1 + 21892 0.85 0.370451
Target:  5'- cGGAccUGGAGGACCaccaGCAGGACCAGa -3'
miRNA:   3'- aCCUaaACUUCCUGGa---UGUCCUGGUC- -5'
31660 5' -50.5 NC_006883.1 + 21940 0.7 0.98221
Target:  5'- aGGAg--GAccaguuGGACCUGuuGGACCAGc -3'
miRNA:   3'- aCCUaaaCUu-----CCUGGAUguCCUGGUC- -5'
31660 5' -50.5 NC_006883.1 + 21980 0.94 0.116178
Target:  5'- uUGGAccaGGAGGACCUGCAGGACCAGg -3'
miRNA:   3'- -ACCUaaaCUUCCUGGAUGUCCUGGUC- -5'
31660 5' -50.5 NC_006883.1 + 22025 0.78 0.719956
Target:  5'- cUGGAcccguAGGACCaGCAGGACCAGu -3'
miRNA:   3'- -ACCUaaacuUCCUGGaUGUCCUGGUC- -5'
31660 5' -50.5 NC_006883.1 + 22072 0.84 0.421751
Target:  5'- aGGAccUGGAGGACCaccaGCAGGACCAGu -3'
miRNA:   3'- aCCUaaACUUCCUGGa---UGUCCUGGUC- -5'
31660 5' -50.5 NC_006883.1 + 22099 0.78 0.739826
Target:  5'- cGGAccUGGAGGACC-ACuuGGACCAGg -3'
miRNA:   3'- aCCUaaACUUCCUGGaUGu-CCUGGUC- -5'
31660 5' -50.5 NC_006883.1 + 22138 0.66 0.998964
Target:  5'- nGG---UGAAccacuuGGACCaGCAGGACCAu -3'
miRNA:   3'- aCCuaaACUU------CCUGGaUGUCCUGGUc -5'
31660 5' -50.5 NC_006883.1 + 22169 0.8 0.638147
Target:  5'- cUGGAg--GAccaccacuAGGACCUGgAGGACCAGg -3'
miRNA:   3'- -ACCUaaaCU--------UCCUGGAUgUCCUGGUC- -5'
31660 5' -50.5 NC_006883.1 + 22211 0.9 0.194799
Target:  5'- cUGGAccUGGAGGACCaGCAGGACCAGg -3'
miRNA:   3'- -ACCUaaACUUCCUGGaUGUCCUGGUC- -5'
31660 5' -50.5 NC_006883.1 + 22237 0.67 0.996466
Target:  5'- aGGAccaGGAGGACC-ACuuGGACCAu -3'
miRNA:   3'- aCCUaaaCUUCCUGGaUGu-CCUGGUc -5'
31660 5' -50.5 NC_006883.1 + 23145 0.68 0.995867
Target:  5'- cUGGAccaGAuGGuCCUACAGGuccACCAGg -3'
miRNA:   3'- -ACCUaaaCUuCCuGGAUGUCC---UGGUC- -5'
31660 5' -50.5 NC_006883.1 + 23156 0.67 0.998194
Target:  5'- -----cUGGAGcACCaGCAGGACCAGu -3'
miRNA:   3'- accuaaACUUCcUGGaUGUCCUGGUC- -5'
31660 5' -50.5 NC_006883.1 + 23206 0.71 0.962783
Target:  5'- aGGAccaGGAGGACCacuuggaccauCAGGACCAGc -3'
miRNA:   3'- aCCUaaaCUUCCUGGau---------GUCCUGGUC- -5'
31660 5' -50.5 NC_006883.1 + 23237 0.86 0.331076
Target:  5'- uUGGAccUGGAGGACCaccaGCAGGACCAGg -3'
miRNA:   3'- -ACCUaaACUUCCUGGa---UGUCCUGGUC- -5'
31660 5' -50.5 NC_006883.1 + 23300 0.84 0.411151
Target:  5'- uUGGAccaccgauaccUGGAGGACCUugAGGACCAGg -3'
miRNA:   3'- -ACCUaa---------ACUUCCUGGAugUCCUGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.