miRNA display CGI


Results 21 - 40 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31660 5' -50.5 NC_006883.1 + 23336 0.78 0.709901
Target:  5'- uUGGAccUGGagaaccagcAGGACCUugAGGACCAGn -3'
miRNA:   3'- -ACCUaaACU---------UCCUGGAugUCCUGGUC- -5'
31660 5' -50.5 NC_006883.1 + 23363 1.09 0.015314
Target:  5'- cUGGAUUUGAAGGACCUACAGGACCAGu -3'
miRNA:   3'- -ACCUAAACUUCCUGGAUGUCCUGGUC- -5'
31660 5' -50.5 NC_006883.1 + 23396 0.78 0.739826
Target:  5'- uUGGAccUGuGGGACCUGUGGGACCAGu -3'
miRNA:   3'- -ACCUaaACuUCCUGGAUGUCCUGGUC- -5'
31660 5' -50.5 NC_006883.1 + 23432 0.75 0.856329
Target:  5'- cUGGAccUGguGGACCUGUAGGACCAu -3'
miRNA:   3'- -ACCUaaACuuCCUGGAUGUCCUGGUc -5'
31660 5' -50.5 NC_006883.1 + 23693 0.91 0.185207
Target:  5'- aUGGAccUGGAGGACCaGCAGGACCAGg -3'
miRNA:   3'- -ACCUaaACUUCCUGGaUGUCCUGGUC- -5'
31660 5' -50.5 NC_006883.1 + 23720 0.88 0.24947
Target:  5'- cUGGAccUGGAGGACCUGCuGGACCAGn -3'
miRNA:   3'- -ACCUaaACUUCCUGGAUGuCCUGGUC- -5'
31660 5' -50.5 NC_006883.1 + 23920 0.75 0.848392
Target:  5'- uUGGAccUGuAGGACCUGCuGGACCu- -3'
miRNA:   3'- -ACCUaaACuUCCUGGAUGuCCUGGuc -5'
31660 5' -50.5 NC_006883.1 + 24952 0.69 0.987519
Target:  5'- uUGGAccUGuAGGACCUGgAGGAgCAa -3'
miRNA:   3'- -ACCUaaACuUCCUGGAUgUCCUgGUc -5'
31660 5' -50.5 NC_006883.1 + 25015 0.84 0.430709
Target:  5'- uUGGAccUGGAGGACCUGgAGGACCGc -3'
miRNA:   3'- -ACCUaaACUUCCUGGAUgUCCUGGUc -5'
31660 5' -50.5 NC_006883.1 + 26546 0.78 0.709901
Target:  5'- cUGGAccUGuAGGACCUGCuGGACCAu -3'
miRNA:   3'- -ACCUaaACuUCCUGGAUGuCCUGGUc -5'
31660 5' -50.5 NC_006883.1 + 26645 0.73 0.917805
Target:  5'- uUGGAccagUUccaccUGuGGGACCaGCAGGACCAGu -3'
miRNA:   3'- -ACCU----AA-----ACuUCCUGGaUGUCCUGGUC- -5'
31660 5' -50.5 NC_006883.1 + 26672 0.77 0.768887
Target:  5'- cUGGAccUGGAGGACCgucuGGACCAGu -3'
miRNA:   3'- -ACCUaaACUUCCUGGauguCCUGGUC- -5'
31660 5' -50.5 NC_006883.1 + 26710 0.72 0.943621
Target:  5'- ------aGGAGGACCUGCuGGACCuGg -3'
miRNA:   3'- accuaaaCUUCCUGGAUGuCCUGGuC- -5'
31660 5' -50.5 NC_006883.1 + 26779 0.83 0.439778
Target:  5'- aGGAccaGuuGGACCUGCAGGACCAGu -3'
miRNA:   3'- aCCUaaaCuuCCUGGAUGUCCUGGUC- -5'
31660 5' -50.5 NC_006883.1 + 26806 0.74 0.892791
Target:  5'- aGGAccaGuuGGACCUGguGGACCAGc -3'
miRNA:   3'- aCCUaaaCuuCCUGGAUguCCUGGUC- -5'
31660 5' -50.5 NC_006883.1 + 26982 0.68 0.995188
Target:  5'- aGGAccUGGAGaACCaGCAGGACCu- -3'
miRNA:   3'- aCCUaaACUUCcUGGaUGUCCUGGuc -5'
31660 5' -50.5 NC_006883.1 + 27497 0.78 0.709901
Target:  5'- aGGAccUGcuGGACCUGUAGGACCAGg -3'
miRNA:   3'- aCCUaaACuuCCUGGAUGUCCUGGUC- -5'
31660 5' -50.5 NC_006883.1 + 27552 0.71 0.96983
Target:  5'- cUGGAccaccuGGACCUGgAGGACCAu -3'
miRNA:   3'- -ACCUaaacuuCCUGGAUgUCCUGGUc -5'
31660 5' -50.5 NC_006883.1 + 27587 0.82 0.515922
Target:  5'- aGGAccUGGAGGACCUGCuGGACCu- -3'
miRNA:   3'- aCCUaaACUUCCUGGAUGuCCUGGuc -5'
31660 5' -50.5 NC_006883.1 + 27659 0.83 0.4771
Target:  5'- aGGAccUGGAGGACCUGCuGGACCuGg -3'
miRNA:   3'- aCCUaaACUUCCUGGAUGuCCUGGuC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.