miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31660 5' -50.5 NC_006883.1 + 248294 0.68 0.995188
Target:  5'- aGGAUgUGcuGGACUgagaucauUAGGACCAGa -3'
miRNA:   3'- aCCUAaACuuCCUGGau------GUCCUGGUC- -5'
31660 5' -50.5 NC_006883.1 + 223064 0.84 0.430709
Target:  5'- aGGAccUGGAGGACCaACAGGACCAc -3'
miRNA:   3'- aCCUaaACUUCCUGGaUGUCCUGGUc -5'
31660 5' -50.5 NC_006883.1 + 223037 0.71 0.959957
Target:  5'- ------aGAAGGACCagUAGGACCAGg -3'
miRNA:   3'- accuaaaCUUCCUGGauGUCCUGGUC- -5'
31660 5' -50.5 NC_006883.1 + 223007 0.67 0.996991
Target:  5'- aGGAccagUUGcaccAGGcgaACCaGCAGGACCAGg -3'
miRNA:   3'- aCCUa---AACu---UCC---UGGaUGUCCUGGUC- -5'
31660 5' -50.5 NC_006883.1 + 222929 0.77 0.757383
Target:  5'- aGGAgaaccaguAGGACCaGCAGGACCAGu -3'
miRNA:   3'- aCCUaaacu---UCCUGGaUGUCCUGGUC- -5'
31660 5' -50.5 NC_006883.1 + 211372 0.67 0.998194
Target:  5'- aGGAgguaauaAAGGACCU-CAuccuGGACCAGg -3'
miRNA:   3'- aCCUaaac---UUCCUGGAuGU----CCUGGUC- -5'
31660 5' -50.5 NC_006883.1 + 210602 0.72 0.948058
Target:  5'- aGGAca-GAAGGugUUAUAGGACCuGg -3'
miRNA:   3'- aCCUaaaCUUCCugGAUGUCCUGGuC- -5'
31660 5' -50.5 NC_006883.1 + 203460 0.66 0.998747
Target:  5'- gGGAUaUUGAaucuugggAGGAUCa--AGGACCAGa -3'
miRNA:   3'- aCCUA-AACU--------UCCUGGaugUCCUGGUC- -5'
31660 5' -50.5 NC_006883.1 + 28550 0.77 0.750595
Target:  5'- cUGGAggaccacuuccaccUGAAGGACCUGuuGGACCAGu -3'
miRNA:   3'- -ACCUaa------------ACUUCCUGGAUguCCUGGUC- -5'
31660 5' -50.5 NC_006883.1 + 28459 0.76 0.823409
Target:  5'- aGGAccUGGAGGuCCUGgAGGACCAc -3'
miRNA:   3'- aCCUaaACUUCCuGGAUgUCCUGGUc -5'
31660 5' -50.5 NC_006883.1 + 28409 0.76 0.814716
Target:  5'- -----cUGGAGGACCUGgAGGACCAc -3'
miRNA:   3'- accuaaACUUCCUGGAUgUCCUGGUc -5'
31660 5' -50.5 NC_006883.1 + 28363 0.87 0.30897
Target:  5'- aGGAgguccUGGAGGACCaGCAGGACCAGu -3'
miRNA:   3'- aCCUaa---ACUUCCUGGaUGUCCUGGUC- -5'
31660 5' -50.5 NC_006883.1 + 28328 0.85 0.370451
Target:  5'- cUGGAccUGGAGGACCUGgAGGACCAu -3'
miRNA:   3'- -ACCUaaACUUCCUGGAUgUCCUGGUc -5'
31660 5' -50.5 NC_006883.1 + 28253 0.77 0.766027
Target:  5'- cUGGAg--GAccaucuccaccaguAGGACCaGCAGGACCAGu -3'
miRNA:   3'- -ACCUaaaCU--------------UCCUGGaUGUCCUGGUC- -5'
31660 5' -50.5 NC_006883.1 + 28160 0.67 0.996991
Target:  5'- uUGGAccagUUccaccUGAAGGACCaGuuGGACCAGn -3'
miRNA:   3'- -ACCU----AA-----ACUUCCUGGaUguCCUGGUC- -5'
31660 5' -50.5 NC_006883.1 + 28124 0.71 0.972695
Target:  5'- uUGGAccUGuAGGuCCUGUAGGACCAGn -3'
miRNA:   3'- -ACCUaaACuUCCuGGAUGUCCUGGUC- -5'
31660 5' -50.5 NC_006883.1 + 28097 0.82 0.506091
Target:  5'- uUGGAccUGGAGGACCaGCAGGACCu- -3'
miRNA:   3'- -ACCUaaACUUCCUGGaUGUCCUGGuc -5'
31660 5' -50.5 NC_006883.1 + 27847 0.7 0.975358
Target:  5'- cUGGuccuacAGGACCUACAGGuCCAa -3'
miRNA:   3'- -ACCuaaacuUCCUGGAUGUCCuGGUc -5'
31660 5' -50.5 NC_006883.1 + 27758 0.71 0.963467
Target:  5'- aGGAccaGuuGGACCUGUGGGACCAGu -3'
miRNA:   3'- aCCUaaaCuuCCUGGAUGUCCUGGUC- -5'
31660 5' -50.5 NC_006883.1 + 27732 0.69 0.990313
Target:  5'- uUGGuccUGuGGGACCUGucGGACCAGu -3'
miRNA:   3'- -ACCuaaACuUCCUGGAUguCCUGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.