miRNA display CGI


Results 21 - 40 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31660 5' -50.5 NC_006883.1 + 223037 0.71 0.959957
Target:  5'- ------aGAAGGACCagUAGGACCAGg -3'
miRNA:   3'- accuaaaCUUCCUGGauGUCCUGGUC- -5'
31660 5' -50.5 NC_006883.1 + 210602 0.72 0.948058
Target:  5'- aGGAca-GAAGGugUUAUAGGACCuGg -3'
miRNA:   3'- aCCUaaaCUUCCugGAUGUCCUGGuC- -5'
31660 5' -50.5 NC_006883.1 + 26710 0.72 0.943621
Target:  5'- ------aGGAGGACCUGCuGGACCuGg -3'
miRNA:   3'- accuaaaCUUCCUGGAUGuCCUGGuC- -5'
31660 5' -50.5 NC_006883.1 + 26645 0.73 0.917805
Target:  5'- uUGGAccagUUccaccUGuGGGACCaGCAGGACCAGu -3'
miRNA:   3'- -ACCU----AA-----ACuUCCUGGaUGUCCUGGUC- -5'
31660 5' -50.5 NC_006883.1 + 21813 0.74 0.899402
Target:  5'- ----cUUG-AGGGCCaGCAGGACCAGg -3'
miRNA:   3'- accuaAACuUCCUGGaUGUCCUGGUC- -5'
31660 5' -50.5 NC_006883.1 + 26806 0.74 0.892791
Target:  5'- aGGAccaGuuGGACCUGguGGACCAGc -3'
miRNA:   3'- aCCUaaaCuuCCUGGAUguCCUGGUC- -5'
31660 5' -50.5 NC_006883.1 + 23432 0.75 0.856329
Target:  5'- cUGGAccUGguGGACCUGUAGGACCAu -3'
miRNA:   3'- -ACCUaaACuuCCUGGAUGUCCUGGUc -5'
31660 5' -50.5 NC_006883.1 + 23920 0.75 0.848392
Target:  5'- uUGGAccUGuAGGACCUGCuGGACCu- -3'
miRNA:   3'- -ACCUaaACuUCCUGGAUGuCCUGGuc -5'
31660 5' -50.5 NC_006883.1 + 28459 0.76 0.823409
Target:  5'- aGGAccUGGAGGuCCUGgAGGACCAc -3'
miRNA:   3'- aCCUaaACUUCCuGGAUgUCCUGGUc -5'
31660 5' -50.5 NC_006883.1 + 28409 0.76 0.814716
Target:  5'- -----cUGGAGGACCUGgAGGACCAc -3'
miRNA:   3'- accuaaACUUCCUGGAUgUCCUGGUc -5'
31660 5' -50.5 NC_006883.1 + 26672 0.77 0.768887
Target:  5'- cUGGAccUGGAGGACCgucuGGACCAGu -3'
miRNA:   3'- -ACCUaaACUUCCUGGauguCCUGGUC- -5'
31660 5' -50.5 NC_006883.1 + 28253 0.77 0.766027
Target:  5'- cUGGAg--GAccaucuccaccaguAGGACCaGCAGGACCAGu -3'
miRNA:   3'- -ACCUaaaCU--------------UCCUGGaUGUCCUGGUC- -5'
31660 5' -50.5 NC_006883.1 + 222929 0.77 0.757383
Target:  5'- aGGAgaaccaguAGGACCaGCAGGACCAGu -3'
miRNA:   3'- aCCUaaacu---UCCUGGaUGUCCUGGUC- -5'
31660 5' -50.5 NC_006883.1 + 28550 0.77 0.750595
Target:  5'- cUGGAggaccacuuccaccUGAAGGACCUGuuGGACCAGu -3'
miRNA:   3'- -ACCUaa------------ACUUCCUGGAUguCCUGGUC- -5'
31660 5' -50.5 NC_006883.1 + 22099 0.78 0.739826
Target:  5'- cGGAccUGGAGGACC-ACuuGGACCAGg -3'
miRNA:   3'- aCCUaaACUUCCUGGaUGu-CCUGGUC- -5'
31660 5' -50.5 NC_006883.1 + 23396 0.78 0.739826
Target:  5'- uUGGAccUGuGGGACCUGUGGGACCAGu -3'
miRNA:   3'- -ACCUaaACuUCCUGGAUGUCCUGGUC- -5'
31660 5' -50.5 NC_006883.1 + 22025 0.78 0.719956
Target:  5'- cUGGAcccguAGGACCaGCAGGACCAGu -3'
miRNA:   3'- -ACCUaaacuUCCUGGaUGUCCUGGUC- -5'
31660 5' -50.5 NC_006883.1 + 23336 0.78 0.709901
Target:  5'- uUGGAccUGGagaaccagcAGGACCUugAGGACCAGn -3'
miRNA:   3'- -ACCUaaACU---------UCCUGGAugUCCUGGUC- -5'
31660 5' -50.5 NC_006883.1 + 26546 0.78 0.709901
Target:  5'- cUGGAccUGuAGGACCUGCuGGACCAu -3'
miRNA:   3'- -ACCUaaACuUCCUGGAUGuCCUGGUc -5'
31660 5' -50.5 NC_006883.1 + 27497 0.78 0.709901
Target:  5'- aGGAccUGcuGGACCUGUAGGACCAGg -3'
miRNA:   3'- aCCUaaACuuCCUGGAUGUCCUGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.