miRNA display CGI


Results 21 - 40 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31661 3' -57.8 NC_006883.1 + 23748 1.07 0.004116
Target:  5'- gCACCACCACCAGAUCCAGGAGGACCUg -3'
miRNA:   3'- -GUGGUGGUGGUCUAGGUCCUCCUGGA- -5'
31661 3' -57.8 NC_006883.1 + 26580 0.78 0.313403
Target:  5'- gCACCGucugcuCCAUCAuuUCCAGGAGGACCUg -3'
miRNA:   3'- -GUGGU------GGUGGUcuAGGUCCUCCUGGA- -5'
31661 3' -57.8 NC_006883.1 + 26635 0.67 0.888153
Target:  5'- -uCCACCugUGGGaCCAGcAGGACCa -3'
miRNA:   3'- guGGUGGugGUCUaGGUCcUCCUGGa -5'
31661 3' -57.8 NC_006883.1 + 26680 0.76 0.396121
Target:  5'- -uCCACCACCuGGaCCuGGAGGACCg -3'
miRNA:   3'- guGGUGGUGGuCUaGGuCCUCCUGGa -5'
31661 3' -57.8 NC_006883.1 + 26730 0.77 0.372213
Target:  5'- cCAUCugcuCCAUCAuuUCCAGGAGGACCUg -3'
miRNA:   3'- -GUGGu---GGUGGUcuAGGUCCUCCUGGA- -5'
31661 3' -57.8 NC_006883.1 + 27005 0.71 0.674929
Target:  5'- aCugUuugaaaACCAGAaCCAGGAGGACCUg -3'
miRNA:   3'- -GugGugg---UGGUCUaGGUCCUCCUGGA- -5'
31661 3' -57.8 NC_006883.1 + 27561 0.76 0.396121
Target:  5'- uGCCACCACCuggaccaccuGGA-CCuGGAGGACCa -3'
miRNA:   3'- gUGGUGGUGG----------UCUaGGuCCUCCUGGa -5'
31661 3' -57.8 NC_006883.1 + 27607 0.83 0.167106
Target:  5'- uCAgCACCAUCAuuUCCAGGAGGACCUg -3'
miRNA:   3'- -GUgGUGGUGGUcuAGGUCCUCCUGGA- -5'
31661 3' -57.8 NC_006883.1 + 27679 0.83 0.167106
Target:  5'- uCAgCACCAUCAuuUCCAGGAGGACCUg -3'
miRNA:   3'- -GUgGUGGUGGUcuAGGUCCUCCUGGA- -5'
31661 3' -57.8 NC_006883.1 + 28179 0.67 0.894591
Target:  5'- uCAgCACCAgCAGGaCCAGuuGGACCa -3'
miRNA:   3'- -GUgGUGGUgGUCUaGGUCcuCCUGGa -5'
31661 3' -57.8 NC_006883.1 + 28240 0.67 0.867608
Target:  5'- -uCCACCAgUAGGaCCAGcAGGACCa -3'
miRNA:   3'- guGGUGGUgGUCUaGGUCcUCCUGGa -5'
31661 3' -57.8 NC_006883.1 + 28273 0.68 0.821409
Target:  5'- -uCCGCCuggACCAGuuggaCCuGGAGGACCa -3'
miRNA:   3'- guGGUGG---UGGUCua---GGuCCUCCUGGa -5'
31661 3' -57.8 NC_006883.1 + 28305 0.69 0.804672
Target:  5'- cCAUCAUCACCAGuaggaCCAGuuGGACCa -3'
miRNA:   3'- -GUGGUGGUGGUCua---GGUCcuCCUGGa -5'
31661 3' -57.8 NC_006883.1 + 28340 0.72 0.606288
Target:  5'- gACCAguuCCGCCuGGaCCuGGAGGACCUg -3'
miRNA:   3'- gUGGU---GGUGGuCUaGGuCCUCCUGGA- -5'
31661 3' -57.8 NC_006883.1 + 28383 0.77 0.372213
Target:  5'- cCAUCAUCACCgucagcaccaggAGGUCCuGGAGGACCa -3'
miRNA:   3'- -GUGGUGGUGG------------UCUAGGuCCUCCUGGa -5'
31661 3' -57.8 NC_006883.1 + 28428 0.75 0.473444
Target:  5'- cCAUCagaACCAUCAGAaCCuGGAGGACCUg -3'
miRNA:   3'- -GUGG---UGGUGGUCUaGGuCCUCCUGGA- -5'
31661 3' -57.8 NC_006883.1 + 28473 0.74 0.528977
Target:  5'- nCAUCuCCACCAGuaggaccuggagGUCCuGGAGGACCa -3'
miRNA:   3'- -GUGGuGGUGGUC------------UAGGuCCUCCUGGa -5'
31661 3' -57.8 NC_006883.1 + 28499 0.78 0.313403
Target:  5'- gACCAguuCCACCuGGaCCAGGAGGACCa -3'
miRNA:   3'- gUGGU---GGUGGuCUaGGUCCUCCUGGa -5'
31661 3' -57.8 NC_006883.1 + 89129 0.68 0.84531
Target:  5'- cCACCACCACCAGAUCCAa-------- -3'
miRNA:   3'- -GUGGUGGUGGUCUAGGUccuccugga -5'
31661 3' -57.8 NC_006883.1 + 112589 0.68 0.840653
Target:  5'- gUAgCACCACCAGAUCCaccaguaccaccaucAGcuGGACCg -3'
miRNA:   3'- -GUgGUGGUGGUCUAGG---------------UCcuCCUGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.