miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31661 3' -57.8 NC_006883.1 + 12666 0.68 0.848379
Target:  5'- cCACCGCCACCAGAagauuuagauugaccUCCuuGuGGAgCUg -3'
miRNA:   3'- -GUGGUGGUGGUCU---------------AGGucCuCCUgGA- -5'
31661 3' -57.8 NC_006883.1 + 14274 0.66 0.923561
Target:  5'- cCugCACCACCAGAUCCugcGGuu-GCUg -3'
miRNA:   3'- -GugGUGGUGGUCUAGGu--CCuccUGGa -5'
31661 3' -57.8 NC_006883.1 + 21790 0.78 0.341896
Target:  5'- cCGCCACCuggACCAGAaggaCCuGGAGGACCa -3'
miRNA:   3'- -GUGGUGG---UGGUCUa---GGuCCUCCUGGa -5'
31661 3' -57.8 NC_006883.1 + 21837 0.66 0.900817
Target:  5'- gACCACCACuCGGA-CCAacaucaccuuGAGGGCCa -3'
miRNA:   3'- gUGGUGGUG-GUCUaGGUc---------CUCCUGGa -5'
31661 3' -57.8 NC_006883.1 + 21881 0.74 0.500872
Target:  5'- gACCACCAgCAGGaCCA-GAGGACCa -3'
miRNA:   3'- gUGGUGGUgGUCUaGGUcCUCCUGGa -5'
31661 3' -57.8 NC_006883.1 + 21959 0.67 0.860363
Target:  5'- gACCAggagauCCAGuaCCAGGAGGACCa -3'
miRNA:   3'- gUGGUggu---GGUCuaGGUCCUCCUGGa -5'
31661 3' -57.8 NC_006883.1 + 21989 0.76 0.388042
Target:  5'- gACCuCCACUuGGaCCAGGAGGACCUg -3'
miRNA:   3'- gUGGuGGUGGuCUaGGUCCUCCUGGA- -5'
31661 3' -57.8 NC_006883.1 + 22061 0.74 0.51017
Target:  5'- gACCACCAgCAGGaCCAGuuGGACCUg -3'
miRNA:   3'- gUGGUGGUgGUCUaGGUCcuCCUGGA- -5'
31661 3' -57.8 NC_006883.1 + 22108 0.76 0.4126
Target:  5'- -uCCACCACuCGGA-CCuGGAGGACCa -3'
miRNA:   3'- guGGUGGUG-GUCUaGGuCCUCCUGGa -5'
31661 3' -57.8 NC_006883.1 + 22161 0.74 0.491649
Target:  5'- --nCACCACUAGGaCCuGGAGGACCa -3'
miRNA:   3'- gugGUGGUGGUCUaGGuCCUCCUGGa -5'
31661 3' -57.8 NC_006883.1 + 22184 0.84 0.151534
Target:  5'- gACCACCACUAGGaCCuGGAGGACCa -3'
miRNA:   3'- gUGGUGGUGGUCUaGGuCCUCCUGGa -5'
31661 3' -57.8 NC_006883.1 + 22224 0.67 0.888153
Target:  5'- nCACUuggACCAUCuGGaCCuGGAGGACCa -3'
miRNA:   3'- -GUGG---UGGUGGuCUaGGuCCUCCUGGa -5'
31661 3' -57.8 NC_006883.1 + 22254 0.77 0.356828
Target:  5'- gCACCAgcagauCCAgCAGGaCCAGGAGGACCa -3'
miRNA:   3'- -GUGGU------GGUgGUCUaGGUCCUCCUGGa -5'
31661 3' -57.8 NC_006883.1 + 23148 0.67 0.88419
Target:  5'- gACCAgaugguccuacagguCCACCAGGUCCAGGuaauacAGGAa-- -3'
miRNA:   3'- gUGGU---------------GGUGGUCUAGGUCC------UCCUgga -5'
31661 3' -57.8 NC_006883.1 + 23153 0.66 0.90683
Target:  5'- gAgCACCAgCAGGaCCAGuuGGACCUg -3'
miRNA:   3'- gUgGUGGUgGUCUaGGUCcuCCUGGA- -5'
31661 3' -57.8 NC_006883.1 + 23225 0.87 0.099106
Target:  5'- gACCACCAgCAGGaCCAGGAGGACCa -3'
miRNA:   3'- gUGGUGGUgGUCUaGGUCCUCCUGGa -5'
31661 3' -57.8 NC_006883.1 + 23256 0.71 0.655367
Target:  5'- uCAUCACCAgCAGGaCCAGuuGGACCUg -3'
miRNA:   3'- -GUGGUGGUgGUCUaGGUCcuCCUGGA- -5'
31661 3' -57.8 NC_006883.1 + 23306 0.7 0.732589
Target:  5'- gACCaguuggACCACC-GAUaCCuGGAGGACCUu -3'
miRNA:   3'- gUGG------UGGUGGuCUA-GGuCCUCCUGGA- -5'
31661 3' -57.8 NC_006883.1 + 23420 0.68 0.84531
Target:  5'- gACCuguaggACCAUCuGGUCCAGuuGGACCUg -3'
miRNA:   3'- gUGG------UGGUGGuCUAGGUCcuCCUGGA- -5'
31661 3' -57.8 NC_006883.1 + 23708 0.72 0.606288
Target:  5'- gACCugCuggACCAGAUggaCCuGGAGGACCa -3'
miRNA:   3'- gUGGugG---UGGUCUA---GGuCCUCCUGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.