miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31661 3' -57.8 NC_006883.1 + 23748 1.07 0.004116
Target:  5'- gCACCACCACCAGAUCCAGGAGGACCUg -3'
miRNA:   3'- -GUGGUGGUGGUCUAGGUCCUCCUGGA- -5'
31661 3' -57.8 NC_006883.1 + 223084 0.9 0.056352
Target:  5'- cCACCACCAgCAGGaCCAGGAGGACCUg -3'
miRNA:   3'- -GUGGUGGUgGUCUaGGUCCUCCUGGA- -5'
31661 3' -57.8 NC_006883.1 + 23225 0.87 0.099106
Target:  5'- gACCACCAgCAGGaCCAGGAGGACCa -3'
miRNA:   3'- gUGGUGGUgGUCUaGGUCCUCCUGGa -5'
31661 3' -57.8 NC_006883.1 + 22184 0.84 0.151534
Target:  5'- gACCACCACUAGGaCCuGGAGGACCa -3'
miRNA:   3'- gUGGUGGUGGUCUaGGuCCUCCUGGa -5'
31661 3' -57.8 NC_006883.1 + 27679 0.83 0.167106
Target:  5'- uCAgCACCAUCAuuUCCAGGAGGACCUg -3'
miRNA:   3'- -GUgGUGGUGGUcuAGGUCCUCCUGGA- -5'
31661 3' -57.8 NC_006883.1 + 27607 0.83 0.167106
Target:  5'- uCAgCACCAUCAuuUCCAGGAGGACCUg -3'
miRNA:   3'- -GUgGUGGUGGUcuAGGUCCUCCUGGA- -5'
31661 3' -57.8 NC_006883.1 + 26580 0.78 0.313403
Target:  5'- gCACCGucugcuCCAUCAuuUCCAGGAGGACCUg -3'
miRNA:   3'- -GUGGU------GGUGGUcuAGGUCCUCCUGGA- -5'
31661 3' -57.8 NC_006883.1 + 28499 0.78 0.313403
Target:  5'- gACCAguuCCACCuGGaCCAGGAGGACCa -3'
miRNA:   3'- gUGGU---GGUGGuCUaGGUCCUCCUGGa -5'
31661 3' -57.8 NC_006883.1 + 21790 0.78 0.341896
Target:  5'- cCGCCACCuggACCAGAaggaCCuGGAGGACCa -3'
miRNA:   3'- -GUGGUGG---UGGUCUa---GGuCCUCCUGGa -5'
31661 3' -57.8 NC_006883.1 + 22254 0.77 0.356828
Target:  5'- gCACCAgcagauCCAgCAGGaCCAGGAGGACCa -3'
miRNA:   3'- -GUGGU------GGUgGUCUaGGUCCUCCUGGa -5'
31661 3' -57.8 NC_006883.1 + 26730 0.77 0.372213
Target:  5'- cCAUCugcuCCAUCAuuUCCAGGAGGACCUg -3'
miRNA:   3'- -GUGGu---GGUGGUcuAGGUCCUCCUGGA- -5'
31661 3' -57.8 NC_006883.1 + 28383 0.77 0.372213
Target:  5'- cCAUCAUCACCgucagcaccaggAGGUCCuGGAGGACCa -3'
miRNA:   3'- -GUGGUGGUGG------------UCUAGGuCCUCCUGGa -5'
31661 3' -57.8 NC_006883.1 + 21989 0.76 0.388042
Target:  5'- gACCuCCACUuGGaCCAGGAGGACCUg -3'
miRNA:   3'- gUGGuGGUGGuCUaGGUCCUCCUGGA- -5'
31661 3' -57.8 NC_006883.1 + 27561 0.76 0.396121
Target:  5'- uGCCACCACCuggaccaccuGGA-CCuGGAGGACCa -3'
miRNA:   3'- gUGGUGGUGG----------UCUaGGuCCUCCUGGa -5'
31661 3' -57.8 NC_006883.1 + 26680 0.76 0.396121
Target:  5'- -uCCACCACCuGGaCCuGGAGGACCg -3'
miRNA:   3'- guGGUGGUGGuCUaGGuCCUCCUGGa -5'
31661 3' -57.8 NC_006883.1 + 22108 0.76 0.4126
Target:  5'- -uCCACCACuCGGA-CCuGGAGGACCa -3'
miRNA:   3'- guGGUGGUG-GUCUaGGuCCUCCUGGa -5'
31661 3' -57.8 NC_006883.1 + 28428 0.75 0.473444
Target:  5'- cCAUCagaACCAUCAGAaCCuGGAGGACCUg -3'
miRNA:   3'- -GUGG---UGGUGGUCUaGGuCCUCCUGGA- -5'
31661 3' -57.8 NC_006883.1 + 22161 0.74 0.491649
Target:  5'- --nCACCACUAGGaCCuGGAGGACCa -3'
miRNA:   3'- gugGUGGUGGUCUaGGuCCUCCUGGa -5'
31661 3' -57.8 NC_006883.1 + 21881 0.74 0.500872
Target:  5'- gACCACCAgCAGGaCCA-GAGGACCa -3'
miRNA:   3'- gUGGUGGUgGUCUaGGUcCUCCUGGa -5'
31661 3' -57.8 NC_006883.1 + 22061 0.74 0.51017
Target:  5'- gACCACCAgCAGGaCCAGuuGGACCUg -3'
miRNA:   3'- gUGGUGGUgGUCUaGGUCcuCCUGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.