miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31661 3' -57.8 NC_006883.1 + 229304 0.66 0.90683
Target:  5'- cCGCCACCGCCAccUCCAGau-GACCc -3'
miRNA:   3'- -GUGGUGGUGGUcuAGGUCcucCUGGa -5'
31661 3' -57.8 NC_006883.1 + 21837 0.66 0.900817
Target:  5'- gACCACCACuCGGA-CCAacaucaccuuGAGGGCCa -3'
miRNA:   3'- gUGGUGGUG-GUCUaGGUc---------CUCCUGGa -5'
31661 3' -57.8 NC_006883.1 + 187710 0.66 0.912056
Target:  5'- aCACCACCACCA----UAGGuguuaguuauguaAGGACCUu -3'
miRNA:   3'- -GUGGUGGUGGUcuagGUCC-------------UCCUGGA- -5'
31661 3' -57.8 NC_006883.1 + 184512 0.66 0.918203
Target:  5'- aUAUCAUgGuCUuGAaCCAGGAGGACCUg -3'
miRNA:   3'- -GUGGUGgU-GGuCUaGGUCCUCCUGGA- -5'
31661 3' -57.8 NC_006883.1 + 14274 0.66 0.923561
Target:  5'- cCugCACCACCAGAUCCugcGGuu-GCUg -3'
miRNA:   3'- -GugGUGGUGGUCUAGGu--CCuccUGGa -5'
31661 3' -57.8 NC_006883.1 + 23153 0.66 0.90683
Target:  5'- gAgCACCAgCAGGaCCAGuuGGACCUg -3'
miRNA:   3'- gUgGUGGUgGUCUaGGUCcuCCUGGA- -5'
31661 3' -57.8 NC_006883.1 + 28240 0.67 0.867608
Target:  5'- -uCCACCAgUAGGaCCAGcAGGACCa -3'
miRNA:   3'- guGGUGGUgGUCUaGGUCcUCCUGGa -5'
31661 3' -57.8 NC_006883.1 + 208940 0.67 0.858152
Target:  5'- uCACUACCACCAGGcUCUAGGGauuuaguagaguuuGGAUUUu -3'
miRNA:   3'- -GUGGUGGUGGUCU-AGGUCCU--------------CCUGGA- -5'
31661 3' -57.8 NC_006883.1 + 21959 0.67 0.860363
Target:  5'- gACCAggagauCCAGuaCCAGGAGGACCa -3'
miRNA:   3'- gUGGUggu---GGUCuaGGUCCUCCUGGa -5'
31661 3' -57.8 NC_006883.1 + 26635 0.67 0.888153
Target:  5'- -uCCACCugUGGGaCCAGcAGGACCa -3'
miRNA:   3'- guGGUGGugGUCUaGGUCcUCCUGGa -5'
31661 3' -57.8 NC_006883.1 + 22224 0.67 0.888153
Target:  5'- nCACUuggACCAUCuGGaCCuGGAGGACCa -3'
miRNA:   3'- -GUGG---UGGUGGuCUaGGuCCUCCUGGa -5'
31661 3' -57.8 NC_006883.1 + 28179 0.67 0.894591
Target:  5'- uCAgCACCAgCAGGaCCAGuuGGACCa -3'
miRNA:   3'- -GUgGUGGUgGUCUaGGUCcuCCUGGa -5'
31661 3' -57.8 NC_006883.1 + 23148 0.67 0.88419
Target:  5'- gACCAgaugguccuacagguCCACCAGGUCCAGGuaauacAGGAa-- -3'
miRNA:   3'- gUGGU---------------GGUGGUCUAGGUCC------UCCUgga -5'
31661 3' -57.8 NC_006883.1 + 28273 0.68 0.821409
Target:  5'- -uCCGCCuggACCAGuuggaCCuGGAGGACCa -3'
miRNA:   3'- guGGUGG---UGGUCua---GGuCCUCCUGGa -5'
31661 3' -57.8 NC_006883.1 + 112589 0.68 0.840653
Target:  5'- gUAgCACCACCAGAUCCaccaguaccaccaucAGcuGGACCg -3'
miRNA:   3'- -GUgGUGGUGGUCUAGG---------------UCcuCCUGGa -5'
31661 3' -57.8 NC_006883.1 + 89129 0.68 0.84531
Target:  5'- cCACCACCACCAGAUCCAa-------- -3'
miRNA:   3'- -GUGGUGGUGGUCUAGGUccuccugga -5'
31661 3' -57.8 NC_006883.1 + 23420 0.68 0.84531
Target:  5'- gACCuguaggACCAUCuGGUCCAGuuGGACCUg -3'
miRNA:   3'- gUGG------UGGUGGuCUAGGUCcuCCUGGA- -5'
31661 3' -57.8 NC_006883.1 + 12666 0.68 0.848379
Target:  5'- cCACCGCCACCAGAagauuuagauugaccUCCuuGuGGAgCUg -3'
miRNA:   3'- -GUGGUGGUGGUCU---------------AGGucCuCCUgGA- -5'
31661 3' -57.8 NC_006883.1 + 28305 0.69 0.804672
Target:  5'- cCAUCAUCACCAGuaggaCCAGuuGGACCa -3'
miRNA:   3'- -GUGGUGGUGGUCua---GGUCcuCCUGGa -5'
31661 3' -57.8 NC_006883.1 + 223053 0.69 0.796084
Target:  5'- gACCaacaggACCACCAGAaggaCCAGuAGGACCa -3'
miRNA:   3'- gUGG------UGGUGGUCUa---GGUCcUCCUGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.