Results 41 - 60 of 84 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31661 | 5' | -56.4 | NC_006883.1 | + | 22042 | 0.76 | 0.523346 |
Target: 5'- --uGGACCUGUaGGACCGucUGGACCc -3' miRNA: 3'- ccuCCUGGACGaCCUGGUcuACCUGG- -5' |
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31661 | 5' | -56.4 | NC_006883.1 | + | 23200 | 0.76 | 0.523346 |
Target: 5'- aGGAGGACCacUUGGACCAucaGGACCa -3' miRNA: 3'- -CCUCCUGGacGACCUGGUcuaCCUGG- -5' |
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31661 | 5' | -56.4 | NC_006883.1 | + | 23354 | 0.76 | 0.513961 |
Target: 5'- -aAGGACCUaCaGGACCAGuUGGACCu -3' miRNA: 3'- ccUCCUGGAcGaCCUGGUCuACCUGG- -5' |
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31661 | 5' | -56.4 | NC_006883.1 | + | 23310 | 0.76 | 0.513027 |
Target: 5'- uGAGGACCaGUUGGACCAccGAUaccuggaGGACCu -3' miRNA: 3'- cCUCCUGGaCGACCUGGU--CUA-------CCUGG- -5' |
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31661 | 5' | -56.4 | NC_006883.1 | + | 24969 | 0.76 | 0.504647 |
Target: 5'- --uGGACCUGaUGGACCAcuUGGACCu -3' miRNA: 3'- ccuCCUGGACgACCUGGUcuACCUGG- -5' |
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31661 | 5' | -56.4 | NC_006883.1 | + | 26779 | 0.76 | 0.484419 |
Target: 5'- aGGAccaguuGGACCUGCaGGACCAGuugcaccagcaGGACCa -3' miRNA: 3'- -CCU------CCUGGACGaCCUGGUCua---------CCUGG- -5' |
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31661 | 5' | -56.4 | NC_006883.1 | + | 23155 | 0.77 | 0.468162 |
Target: 5'- uGGAGcACCaGCaGGACCAGuUGGACCu -3' miRNA: 3'- -CCUCcUGGaCGaCCUGGUCuACCUGG- -5' |
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31661 | 5' | -56.4 | NC_006883.1 | + | 23425 | 0.77 | 0.459252 |
Target: 5'- uGGuGGACCUGUaggaccaucUGGuCCAGuUGGACCu -3' miRNA: 3'- -CCuCCUGGACG---------ACCuGGUCuACCUGG- -5' |
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31661 | 5' | -56.4 | NC_006883.1 | + | 22099 | 0.77 | 0.441709 |
Target: 5'- --cGGACCUGgaGGACCAcuUGGACCn -3' miRNA: 3'- ccuCCUGGACgaCCUGGUcuACCUGG- -5' |
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31661 | 5' | -56.4 | NC_006883.1 | + | 23686 | 0.79 | 0.383459 |
Target: 5'- uGGAGGACCaGCaGGACCAGGUccACCa -3' miRNA: 3'- -CCUCCUGGaCGaCCUGGUCUAccUGG- -5' |
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31661 | 5' | -56.4 | NC_006883.1 | + | 22204 | 0.79 | 0.360104 |
Target: 5'- uGGAGGACCaGCaGGACCAGGaccaccacuaGGACCu -3' miRNA: 3'- -CCUCCUGGaCGaCCUGGUCUa---------CCUGG- -5' |
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31661 | 5' | -56.4 | NC_006883.1 | + | 26627 | 0.79 | 0.352543 |
Target: 5'- -uGGGACCaGCaGGACCAGuUGGACCu -3' miRNA: 3'- ccUCCUGGaCGaCCUGGUCuACCUGG- -5' |
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31661 | 5' | -56.4 | NC_006883.1 | + | 26985 | 0.79 | 0.352543 |
Target: 5'- aGGAGGACCUGgaGaACCAGcaGGACCu -3' miRNA: 3'- -CCUCCUGGACgaCcUGGUCuaCCUGG- -5' |
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31661 | 5' | -56.4 | NC_006883.1 | + | 27723 | 0.79 | 0.352543 |
Target: 5'- -uGGGACCUGUcGGACCAGuaGGACCu -3' miRNA: 3'- ccUCCUGGACGaCCUGGUCuaCCUGG- -5' |
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31661 | 5' | -56.4 | NC_006883.1 | + | 28105 | 0.8 | 0.33054 |
Target: 5'- aGGAccaguuGGACCUGgaGGACCAGcaGGACCu -3' miRNA: 3'- -CCU------CCUGGACgaCCUGGUCuaCCUGG- -5' |
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31661 | 5' | -56.4 | NC_006883.1 | + | 22016 | 0.8 | 0.316442 |
Target: 5'- -uAGGACCaGCaGGACCAGuUGGACCa -3' miRNA: 3'- ccUCCUGGaCGaCCUGGUCuACCUGG- -5' |
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31661 | 5' | -56.4 | NC_006883.1 | + | 22913 | 0.8 | 0.309566 |
Target: 5'- --uGGACCUGCUGGuCCuGAUGGuCCa -3' miRNA: 3'- ccuCCUGGACGACCuGGuCUACCuGG- -5' |
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31661 | 5' | -56.4 | NC_006883.1 | + | 21811 | 0.8 | 0.309565 |
Target: 5'- uGAGGGCCaGCaGGACCAGGaccgccaccUGGACCa -3' miRNA: 3'- cCUCCUGGaCGaCCUGGUCU---------ACCUGG- -5' |
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31661 | 5' | -56.4 | NC_006883.1 | + | 22231 | 0.8 | 0.309565 |
Target: 5'- aGGAGGACCacUUGGACCAucUGGACCu -3' miRNA: 3'- -CCUCCUGGacGACCUGGUcuACCUGG- -5' |
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31661 | 5' | -56.4 | NC_006883.1 | + | 23937 | 0.82 | 0.264615 |
Target: 5'- --cGGACCaGUUGGACCAGuUGGACCu -3' miRNA: 3'- ccuCCUGGaCGACCUGGUCuACCUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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