miRNA display CGI


Results 21 - 40 of 84 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31661 5' -56.4 NC_006883.1 + 21979 0.69 0.870103
Target:  5'- --uGGuCCUGCUGGAUCuGcUGGugCg -3'
miRNA:   3'- ccuCCuGGACGACCUGGuCuACCugG- -5'
31661 5' -56.4 NC_006883.1 + 28078 0.69 0.870103
Target:  5'- cGGAacuGGuCCUGCUGGuCCuccaGGACCu -3'
miRNA:   3'- -CCU---CCuGGACGACCuGGucuaCCUGG- -5'
31661 5' -56.4 NC_006883.1 + 5424 0.69 0.855579
Target:  5'- uGAuGGACCUGCcgcacGAUUAGGUGGAUCu -3'
miRNA:   3'- cCU-CCUGGACGac---CUGGUCUACCUGG- -5'
31661 5' -56.4 NC_006883.1 + 21596 0.7 0.829208
Target:  5'- --uGGACCUGCUGGuCCuccugguccugcuGGUGGuCCu -3'
miRNA:   3'- ccuCCUGGACGACCuGGu------------CUACCuGG- -5'
31661 5' -56.4 NC_006883.1 + 211383 0.7 0.816125
Target:  5'- -aAGGACCUcaucCUGGACCAGGuUGGAa- -3'
miRNA:   3'- ccUCCUGGAc---GACCUGGUCU-ACCUgg -5'
31661 5' -56.4 NC_006883.1 + 222945 0.71 0.799221
Target:  5'- -cAGGACCaGCaGGACCAGGagaaccaguaGGACCa -3'
miRNA:   3'- ccUCCUGGaCGaCCUGGUCUa---------CCUGG- -5'
31661 5' -56.4 NC_006883.1 + 16149 0.71 0.790557
Target:  5'- gGGuGGACCUGCUGuuuucagucuGAUCGGcaAUGGugCu -3'
miRNA:   3'- -CCuCCUGGACGAC----------CUGGUC--UACCugG- -5'
31661 5' -56.4 NC_006883.1 + 27820 0.71 0.758339
Target:  5'- -uAGGuCCUGCUGGuccuCCAGGUccaacugguccuacaGGACCu -3'
miRNA:   3'- ccUCCuGGACGACCu---GGUCUA---------------CCUGG- -5'
31661 5' -56.4 NC_006883.1 + 28408 0.72 0.745429
Target:  5'- uGGAGGACCUGgaGGACCAcuucccCCa -3'
miRNA:   3'- -CCUCCUGGACgaCCUGGUcuaccuGG- -5'
31661 5' -56.4 NC_006883.1 + 28460 0.72 0.726684
Target:  5'- -uAGGACCUGgaGGuCCuGGaGGACCa -3'
miRNA:   3'- ccUCCUGGACgaCCuGGuCUaCCUGG- -5'
31661 5' -56.4 NC_006883.1 + 112317 0.72 0.707638
Target:  5'- uGGuGGAUCUGgUGGugCuacuGGUGGAUCu -3'
miRNA:   3'- -CCuCCUGGACgACCugGu---CUACCUGG- -5'
31661 5' -56.4 NC_006883.1 + 23136 0.72 0.707638
Target:  5'- -cAGGuCCaaCUGGACCAGAUGGuCCu -3'
miRNA:   3'- ccUCCuGGacGACCUGGUCUACCuGG- -5'
31661 5' -56.4 NC_006883.1 + 28501 0.73 0.688357
Target:  5'- --cGGACCaguuccacCUGGACCAGGaGGACCa -3'
miRNA:   3'- ccuCCUGGac------GACCUGGUCUaCCUGG- -5'
31661 5' -56.4 NC_006883.1 + 248293 0.73 0.678649
Target:  5'- -aAGGAUgUGCUGGACUgAGAUcauuaGGACCa -3'
miRNA:   3'- ccUCCUGgACGACCUGG-UCUA-----CCUGG- -5'
31661 5' -56.4 NC_006883.1 + 23911 0.73 0.659134
Target:  5'- -uAGGACCUGCUGGACCuGuu-GAUCc -3'
miRNA:   3'- ccUCCUGGACGACCUGGuCuacCUGG- -5'
31661 5' -56.4 NC_006883.1 + 28267 0.74 0.619924
Target:  5'- --uGGACCaGUUGGACCuGGaGGACCa -3'
miRNA:   3'- ccuCCUGGaCGACCUGGuCUaCCUGG- -5'
31661 5' -56.4 NC_006883.1 + 23731 0.74 0.600342
Target:  5'- aGGAGGACCUGCUGGACCn-------- -3'
miRNA:   3'- -CCUCCUGGACGACCUGGucuaccugg -5'
31661 5' -56.4 NC_006883.1 + 21327 0.75 0.580846
Target:  5'- -aAGGAaCUGCUGGACUAGuaauUGGAUCg -3'
miRNA:   3'- ccUCCUgGACGACCUGGUCu---ACCUGG- -5'
31661 5' -56.4 NC_006883.1 + 28232 0.75 0.571146
Target:  5'- -uAGGACCaGCaGGACCAGucGGACCa -3'
miRNA:   3'- ccUCCUGGaCGaCCUGGUCuaCCUGG- -5'
31661 5' -56.4 NC_006883.1 + 27758 0.75 0.542304
Target:  5'- aGGAccaguuGGACCUGUgGGACCAGuUGGuCCu -3'
miRNA:   3'- -CCU------CCUGGACGaCCUGGUCuACCuGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.