miRNA display CGI


Results 21 - 40 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31661 5' -56.4 NC_006883.1 + 28321 0.83 0.209267
Target:  5'- uGGAGGACCUGgaGGACCaucaucaccaguaGGAccaguUGGACCa -3'
miRNA:   3'- -CCUCCUGGACgaCCUGG-------------UCU-----ACCUGG- -5'
31661 5' -56.4 NC_006883.1 + 28142 0.83 0.209763
Target:  5'- -aAGGACCaGUUGGACCAGuUGGACCu -3'
miRNA:   3'- ccUCCUGGaCGACCUGGUCuACCUGG- -5'
31661 5' -56.4 NC_006883.1 + 27536 0.83 0.214774
Target:  5'- uGGAGGACCaucuccaccUGUaGGACCuGAUGGACCu -3'
miRNA:   3'- -CCUCCUGG---------ACGaCCUGGuCUACCUGG- -5'
31661 5' -56.4 NC_006883.1 + 21973 0.82 0.258644
Target:  5'- aGGAGGACCUGCaGGACCAGGa-GAUCc -3'
miRNA:   3'- -CCUCCUGGACGaCCUGGUCUacCUGG- -5'
31661 5' -56.4 NC_006883.1 + 23937 0.82 0.264615
Target:  5'- --cGGACCaGUUGGACCAGuUGGACCu -3'
miRNA:   3'- ccuCCUGGaCGACCUGGUCuACCUGG- -5'
31661 5' -56.4 NC_006883.1 + 21811 0.8 0.309565
Target:  5'- uGAGGGCCaGCaGGACCAGGaccgccaccUGGACCa -3'
miRNA:   3'- cCUCCUGGaCGaCCUGGUCU---------ACCUGG- -5'
31661 5' -56.4 NC_006883.1 + 22231 0.8 0.309565
Target:  5'- aGGAGGACCacUUGGACCAucUGGACCu -3'
miRNA:   3'- -CCUCCUGGacGACCUGGUcuACCUGG- -5'
31661 5' -56.4 NC_006883.1 + 22913 0.8 0.309566
Target:  5'- --uGGACCUGCUGGuCCuGAUGGuCCa -3'
miRNA:   3'- ccuCCUGGACGACCuGGuCUACCuGG- -5'
31661 5' -56.4 NC_006883.1 + 22016 0.8 0.316442
Target:  5'- -uAGGACCaGCaGGACCAGuUGGACCa -3'
miRNA:   3'- ccUCCUGGaCGaCCUGGUCuACCUGG- -5'
31661 5' -56.4 NC_006883.1 + 28105 0.8 0.33054
Target:  5'- aGGAccaguuGGACCUGgaGGACCAGcaGGACCu -3'
miRNA:   3'- -CCU------CCUGGACgaCCUGGUCuaCCUGG- -5'
31661 5' -56.4 NC_006883.1 + 27723 0.79 0.352543
Target:  5'- -uGGGACCUGUcGGACCAGuaGGACCu -3'
miRNA:   3'- ccUCCUGGACGaCCUGGUCuaCCUGG- -5'
31661 5' -56.4 NC_006883.1 + 26985 0.79 0.352543
Target:  5'- aGGAGGACCUGgaGaACCAGcaGGACCu -3'
miRNA:   3'- -CCUCCUGGACgaCcUGGUCuaCCUGG- -5'
31661 5' -56.4 NC_006883.1 + 26627 0.79 0.352543
Target:  5'- -uGGGACCaGCaGGACCAGuUGGACCu -3'
miRNA:   3'- ccUCCUGGaCGaCCUGGUCuACCUGG- -5'
31661 5' -56.4 NC_006883.1 + 22204 0.79 0.360104
Target:  5'- uGGAGGACCaGCaGGACCAGGaccaccacuaGGACCu -3'
miRNA:   3'- -CCUCCUGGaCGaCCUGGUCUa---------CCUGG- -5'
31661 5' -56.4 NC_006883.1 + 23686 0.79 0.383459
Target:  5'- uGGAGGACCaGCaGGACCAGGUccACCa -3'
miRNA:   3'- -CCUCCUGGaCGaCCUGGUCUAccUGG- -5'
31661 5' -56.4 NC_006883.1 + 22099 0.77 0.441709
Target:  5'- --cGGACCUGgaGGACCAcuUGGACCn -3'
miRNA:   3'- ccuCCUGGACgaCCUGGUcuACCUGG- -5'
31661 5' -56.4 NC_006883.1 + 23425 0.77 0.459252
Target:  5'- uGGuGGACCUGUaggaccaucUGGuCCAGuUGGACCu -3'
miRNA:   3'- -CCuCCUGGACG---------ACCuGGUCuACCUGG- -5'
31661 5' -56.4 NC_006883.1 + 23155 0.77 0.468162
Target:  5'- uGGAGcACCaGCaGGACCAGuUGGACCu -3'
miRNA:   3'- -CCUCcUGGaCGaCCUGGUCuACCUGG- -5'
31661 5' -56.4 NC_006883.1 + 26779 0.76 0.484419
Target:  5'- aGGAccaguuGGACCUGCaGGACCAGuugcaccagcaGGACCa -3'
miRNA:   3'- -CCU------CCUGGACGaCCUGGUCua---------CCUGG- -5'
31661 5' -56.4 NC_006883.1 + 24969 0.76 0.504647
Target:  5'- --uGGACCUGaUGGACCAcuUGGACCu -3'
miRNA:   3'- ccuCCUGGACgACCUGGUcuACCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.