miRNA display CGI


Results 1 - 20 of 84 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31661 5' -56.4 NC_006883.1 + 23713 1.13 0.002596
Target:  5'- uGGAGGACCUGCUGGACCAGAUGGACCu -3'
miRNA:   3'- -CCUCCUGGACGACCUGGUCUACCUGG- -5'
31661 5' -56.4 NC_006883.1 + 26557 0.95 0.037677
Target:  5'- aGGAGGACCUGCUGGACCuguaGGAccugcUGGACCa -3'
miRNA:   3'- -CCUCCUGGACGACCUGG----UCU-----ACCUGG- -5'
31661 5' -56.4 NC_006883.1 + 28529 0.92 0.058641
Target:  5'- -aAGGACCUGUUGGACCAGuUGGACCa -3'
miRNA:   3'- ccUCCUGGACGACCUGGUCuACCUGG- -5'
31661 5' -56.4 NC_006883.1 + 27581 0.92 0.065022
Target:  5'- uGGAGGACCUGCUGGACCuGugccaccaccUGGACCa -3'
miRNA:   3'- -CCUCCUGGACGACCUGGuCu---------ACCUGG- -5'
31661 5' -56.4 NC_006883.1 + 27662 0.9 0.086205
Target:  5'- aGGAGGACCUGgaGGACCuGcUGGACCu -3'
miRNA:   3'- -CCUCCUGGACgaCCUGGuCuACCUGG- -5'
31661 5' -56.4 NC_006883.1 + 26665 0.89 0.090706
Target:  5'- uGGAGGACC-GuCUGGACCAGuUGGACCa -3'
miRNA:   3'- -CCUCCUGGaC-GACCUGGUCuACCUGG- -5'
31661 5' -56.4 NC_006883.1 + 21774 0.88 0.105583
Target:  5'- -aAGGACCUGgaGGACCAGAaGGACCa -3'
miRNA:   3'- ccUCCUGGACgaCCUGGUCUaCCUGG- -5'
31661 5' -56.4 NC_006883.1 + 223067 0.87 0.122732
Target:  5'- aGGAGGACCUGgaGGACCAacaGGACCa -3'
miRNA:   3'- -CCUCCUGGACgaCCUGGUcuaCCUGG- -5'
31661 5' -56.4 NC_006883.1 + 21940 0.87 0.125831
Target:  5'- aGGAGGACCaGUUGGACCuGuUGGACCa -3'
miRNA:   3'- -CCUCCUGGaCGACCUGGuCuACCUGG- -5'
31661 5' -56.4 NC_006883.1 + 26710 0.87 0.135567
Target:  5'- aGGAGGACCUGCUGGACCuGGAgu-ACCa -3'
miRNA:   3'- -CCUCCUGGACGACCUGG-UCUaccUGG- -5'
31661 5' -56.4 NC_006883.1 + 25008 0.86 0.142437
Target:  5'- uGGAGGACCUGgaGGACCgcuaGGAccacuUGGACCa -3'
miRNA:   3'- -CCUCCUGGACgaCCUGG----UCU-----ACCUGG- -5'
31661 5' -56.4 NC_006883.1 + 21886 0.85 0.164997
Target:  5'- uGGAGGACCaccaGCaGGACCAGA-GGACCa -3'
miRNA:   3'- -CCUCCUGGa---CGaCCUGGUCUaCCUGG- -5'
31661 5' -56.4 NC_006883.1 + 22075 0.85 0.169056
Target:  5'- aGGAGGACCUGgaGGACCAccagcaGGACCa -3'
miRNA:   3'- -CCUCCUGGACgaCCUGGUcua---CCUGG- -5'
31661 5' -56.4 NC_006883.1 + 23230 0.85 0.177443
Target:  5'- uGGAGGACCaccaGCaGGACCAGGaGGACCa -3'
miRNA:   3'- -CCUCCUGGa---CGaCCUGGUCUaCCUGG- -5'
31661 5' -56.4 NC_006883.1 + 28363 0.85 0.177443
Target:  5'- aGGAGGuCCUGgaGGACCAGcaGGACCa -3'
miRNA:   3'- -CCUCCuGGACgaCCUGGUCuaCCUGG- -5'
31661 5' -56.4 NC_006883.1 + 23387 0.85 0.177443
Target:  5'- -uGGGACCUGUgGGACCAGuUGGACCu -3'
miRNA:   3'- ccUCCUGGACGaCCUGGUCuACCUGG- -5'
31661 5' -56.4 NC_006883.1 + 26807 0.84 0.181773
Target:  5'- -cAGGACCaGUUGGACCuGGUGGACCa -3'
miRNA:   3'- ccUCCUGGaCGACCUGGuCUACCUGG- -5'
31661 5' -56.4 NC_006883.1 + 27498 0.84 0.181773
Target:  5'- -uAGGACCUGCUGGACCuguaGGACCa -3'
miRNA:   3'- ccUCCUGGACGACCUGGucuaCCUGG- -5'
31661 5' -56.4 NC_006883.1 + 21731 0.84 0.181773
Target:  5'- uGGAGGACCaGCaGGACCAGuaGGACCa -3'
miRNA:   3'- -CCUCCUGGaCGaCCUGGUCuaCCUGG- -5'
31661 5' -56.4 NC_006883.1 + 22154 0.84 0.200042
Target:  5'- -uAGGACCUGgaGGACCAGGugaaccacuUGGACCa -3'
miRNA:   3'- ccUCCUGGACgaCCUGGUCU---------ACCUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.