miRNA display CGI


Results 1 - 20 of 84 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31661 5' -56.4 NC_006883.1 + 27964 0.67 0.94842
Target:  5'- --uGGuCCUGCUGGuCCuacugguggAGAUGGuCCu -3'
miRNA:   3'- ccuCCuGGACGACCuGG---------UCUACCuGG- -5'
31661 5' -56.4 NC_006883.1 + 21854 0.68 0.896764
Target:  5'- uGGAgauGGuCCUGCUGGuCCAaGUGGuucACCu -3'
miRNA:   3'- -CCU---CCuGGACGACCuGGUcUACC---UGG- -5'
31661 5' -56.4 NC_006883.1 + 23410 0.68 0.914552
Target:  5'- uGGAccuGGuCCUGCUGGuccuCCAGGuccaucUGGuCCa -3'
miRNA:   3'- -CCU---CCuGGACGACCu---GGUCU------ACCuGG- -5'
31661 5' -56.4 NC_006883.1 + 39888 0.68 0.920047
Target:  5'- uGGuaauGGugCUGCUGGugUuccUGGAUCa -3'
miRNA:   3'- -CCu---CCugGACGACCugGucuACCUGG- -5'
31661 5' -56.4 NC_006883.1 + 27911 0.67 0.93038
Target:  5'- --uGGuCCUGCUGGugCugacggaaguGAUGGugCu -3'
miRNA:   3'- ccuCCuGGACGACCugGu---------CUACCugG- -5'
31661 5' -56.4 NC_006883.1 + 26359 0.67 0.939835
Target:  5'- --uGGuCCUGCUGGucccaCAGGUGGaACUg -3'
miRNA:   3'- ccuCCuGGACGACCug---GUCUACC-UGG- -5'
31661 5' -56.4 NC_006883.1 + 23058 0.67 0.939835
Target:  5'- -aAGGuCCUGCUGGuucuCCAGGuccaacUGGuCCu -3'
miRNA:   3'- ccUCCuGGACGACCu---GGUCU------ACCuGG- -5'
31661 5' -56.4 NC_006883.1 + 26476 0.67 0.939835
Target:  5'- uGGAaguaauGGuCCUGCUGGugCAacUGGuCCu -3'
miRNA:   3'- -CCU------CCuGGACGACCugGUcuACCuGG- -5'
31661 5' -56.4 NC_006883.1 + 14004 0.67 0.944235
Target:  5'- -cAGGAUCUGgUGGugCAGGUGuauaucGAUCa -3'
miRNA:   3'- ccUCCUGGACgACCugGUCUAC------CUGG- -5'
31661 5' -56.4 NC_006883.1 + 28078 0.69 0.870103
Target:  5'- cGGAacuGGuCCUGCUGGuCCuccaGGACCu -3'
miRNA:   3'- -CCU---CCuGGACGACCuGGucuaCCUGG- -5'
31661 5' -56.4 NC_006883.1 + 192092 0.69 0.870103
Target:  5'- ---uGGCCUGCUGGugUAGGUGGu-- -3'
miRNA:   3'- ccucCUGGACGACCugGUCUACCugg -5'
31661 5' -56.4 NC_006883.1 + 21979 0.69 0.870103
Target:  5'- --uGGuCCUGCUGGAUCuGcUGGugCg -3'
miRNA:   3'- ccuCCuGGACGACCUGGuCuACCugG- -5'
31661 5' -56.4 NC_006883.1 + 248293 0.73 0.678649
Target:  5'- -aAGGAUgUGCUGGACUgAGAUcauuaGGACCa -3'
miRNA:   3'- ccUCCUGgACGACCUGG-UCUA-----CCUGG- -5'
31661 5' -56.4 NC_006883.1 + 112317 0.72 0.707638
Target:  5'- uGGuGGAUCUGgUGGugCuacuGGUGGAUCu -3'
miRNA:   3'- -CCuCCUGGACgACCugGu---CUACCUGG- -5'
31661 5' -56.4 NC_006883.1 + 23136 0.72 0.707638
Target:  5'- -cAGGuCCaaCUGGACCAGAUGGuCCu -3'
miRNA:   3'- ccUCCuGGacGACCUGGUCUACCuGG- -5'
31661 5' -56.4 NC_006883.1 + 27820 0.71 0.758339
Target:  5'- -uAGGuCCUGCUGGuccuCCAGGUccaacugguccuacaGGACCu -3'
miRNA:   3'- ccUCCuGGACGACCu---GGUCUA---------------CCUGG- -5'
31661 5' -56.4 NC_006883.1 + 16149 0.71 0.790557
Target:  5'- gGGuGGACCUGCUGuuuucagucuGAUCGGcaAUGGugCu -3'
miRNA:   3'- -CCuCCUGGACGAC----------CUGGUC--UACCugG- -5'
31661 5' -56.4 NC_006883.1 + 211383 0.7 0.816125
Target:  5'- -aAGGACCUcaucCUGGACCAGGuUGGAa- -3'
miRNA:   3'- ccUCCUGGAc---GACCUGGUCU-ACCUgg -5'
31661 5' -56.4 NC_006883.1 + 21596 0.7 0.829208
Target:  5'- --uGGACCUGCUGGuCCuccugguccugcuGGUGGuCCu -3'
miRNA:   3'- ccuCCUGGACGACCuGGu------------CUACCuGG- -5'
31661 5' -56.4 NC_006883.1 + 21929 0.69 0.870103
Target:  5'- uGGuccuGGuCCUGCUGGuCCuccaggucAGAUGGuCCa -3'
miRNA:   3'- -CCu---CCuGGACGACCuGG--------UCUACCuGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.