miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31661 5' -56.4 NC_006883.1 + 28565 0.66 0.952391
Target:  5'- -aAGuuCCUGgUGGACCuGGaGGACCa -3'
miRNA:   3'- ccUCcuGGACgACCUGGuCUaCCUGG- -5'
31661 5' -56.4 NC_006883.1 + 23200 0.76 0.523346
Target:  5'- aGGAGGACCacUUGGACCAucaGGACCa -3'
miRNA:   3'- -CCUCCUGGacGACCUGGUcuaCCUGG- -5'
31661 5' -56.4 NC_006883.1 + 23310 0.76 0.513027
Target:  5'- uGAGGACCaGUUGGACCAccGAUaccuggaGGACCu -3'
miRNA:   3'- cCUCCUGGaCGACCUGGU--CUA-------CCUGG- -5'
31661 5' -56.4 NC_006883.1 + 23713 1.13 0.002596
Target:  5'- uGGAGGACCUGCUGGACCAGAUGGACCu -3'
miRNA:   3'- -CCUCCUGGACGACCUGGUCUACCUGG- -5'
31661 5' -56.4 NC_006883.1 + 28178 0.68 0.896764
Target:  5'- -cAGcACCaGCaGGACCAGuUGGACCa -3'
miRNA:   3'- ccUCcUGGaCGaCCUGGUCuACCUGG- -5'
31661 5' -56.4 NC_006883.1 + 5424 0.69 0.855579
Target:  5'- uGAuGGACCUGCcgcacGAUUAGGUGGAUCu -3'
miRNA:   3'- cCU-CCUGGACGac---CUGGUCUACCUGG- -5'
31661 5' -56.4 NC_006883.1 + 28408 0.72 0.745429
Target:  5'- uGGAGGACCUGgaGGACCAcuucccCCa -3'
miRNA:   3'- -CCUCCUGGACgaCCUGGUcuaccuGG- -5'
31661 5' -56.4 NC_006883.1 + 28460 0.72 0.726684
Target:  5'- -uAGGACCUGgaGGuCCuGGaGGACCa -3'
miRNA:   3'- ccUCCUGGACgaCCuGGuCUaCCUGG- -5'
31661 5' -56.4 NC_006883.1 + 28267 0.74 0.619924
Target:  5'- --uGGACCaGUUGGACCuGGaGGACCa -3'
miRNA:   3'- ccuCCUGGaCGACCUGGuCUaCCUGG- -5'
31661 5' -56.4 NC_006883.1 + 22042 0.76 0.523346
Target:  5'- --uGGACCUGUaGGACCGucUGGACCc -3'
miRNA:   3'- ccuCCUGGACGaCCUGGUcuACCUGG- -5'
31661 5' -56.4 NC_006883.1 + 21327 0.75 0.580846
Target:  5'- -aAGGAaCUGCUGGACUAGuaauUGGAUCg -3'
miRNA:   3'- ccUCCUgGACGACCUGGUCu---ACCUGG- -5'
31661 5' -56.4 NC_006883.1 + 23911 0.73 0.659134
Target:  5'- -uAGGACCUGCUGGACCuGuu-GAUCc -3'
miRNA:   3'- ccUCCUGGACGACCUGGuCuacCUGG- -5'
31661 5' -56.4 NC_006883.1 + 222993 0.67 0.94842
Target:  5'- -cAGGcgaACCaGCaGGACCAGGugaaccuugUGGACCa -3'
miRNA:   3'- ccUCC---UGGaCGaCCUGGUCU---------ACCUGG- -5'
31661 5' -56.4 NC_006883.1 + 28232 0.75 0.571146
Target:  5'- -uAGGACCaGCaGGACCAGucGGACCa -3'
miRNA:   3'- ccUCCUGGaCGaCCUGGUCuaCCUGG- -5'
31661 5' -56.4 NC_006883.1 + 23274 0.67 0.943805
Target:  5'- uGAGGACCaggagcaccaucaUcaccaGCaGGACCAGuUGGACCn -3'
miRNA:   3'- cCUCCUGG-------------A-----CGaCCUGGUCuACCUGG- -5'
31661 5' -56.4 NC_006883.1 + 28501 0.73 0.688357
Target:  5'- --cGGACCaguuccacCUGGACCAGGaGGACCa -3'
miRNA:   3'- ccuCCUGGac------GACCUGGUCUaCCUGG- -5'
31661 5' -56.4 NC_006883.1 + 27758 0.75 0.542304
Target:  5'- aGGAccaguuGGACCUGUgGGACCAGuUGGuCCu -3'
miRNA:   3'- -CCU------CCUGGACGaCCUGGUCuACCuGG- -5'
31661 5' -56.4 NC_006883.1 + 23354 0.76 0.513961
Target:  5'- -aAGGACCUaCaGGACCAGuUGGACCu -3'
miRNA:   3'- ccUCCUGGAcGaCCUGGUCuACCUGG- -5'
31661 5' -56.4 NC_006883.1 + 223035 0.68 0.914552
Target:  5'- -aAGGACCaGUaGGACCAGGauuuccaacaGGACCa -3'
miRNA:   3'- ccUCCUGGaCGaCCUGGUCUa---------CCUGG- -5'
31661 5' -56.4 NC_006883.1 + 222945 0.71 0.799221
Target:  5'- -cAGGACCaGCaGGACCAGGagaaccaguaGGACCa -3'
miRNA:   3'- ccUCCUGGaCGaCCUGGUCUa---------CCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.