miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31661 5' -56.4 NC_006883.1 + 5424 0.69 0.855579
Target:  5'- uGAuGGACCUGCcgcacGAUUAGGUGGAUCu -3'
miRNA:   3'- cCU-CCUGGACGac---CUGGUCUACCUGG- -5'
31661 5' -56.4 NC_006883.1 + 14004 0.67 0.944235
Target:  5'- -cAGGAUCUGgUGGugCAGGUGuauaucGAUCa -3'
miRNA:   3'- ccUCCUGGACgACCugGUCUAC------CUGG- -5'
31661 5' -56.4 NC_006883.1 + 16149 0.71 0.790557
Target:  5'- gGGuGGACCUGCUGuuuucagucuGAUCGGcaAUGGugCu -3'
miRNA:   3'- -CCuCCUGGACGAC----------CUGGUC--UACCugG- -5'
31661 5' -56.4 NC_006883.1 + 21327 0.75 0.580846
Target:  5'- -aAGGAaCUGCUGGACUAGuaauUGGAUCg -3'
miRNA:   3'- ccUCCUgGACGACCUGGUCu---ACCUGG- -5'
31661 5' -56.4 NC_006883.1 + 21596 0.7 0.829208
Target:  5'- --uGGACCUGCUGGuCCuccugguccugcuGGUGGuCCu -3'
miRNA:   3'- ccuCCUGGACGACCuGGu------------CUACCuGG- -5'
31661 5' -56.4 NC_006883.1 + 21731 0.84 0.181773
Target:  5'- uGGAGGACCaGCaGGACCAGuaGGACCa -3'
miRNA:   3'- -CCUCCUGGaCGaCCUGGUCuaCCUGG- -5'
31661 5' -56.4 NC_006883.1 + 21774 0.88 0.105583
Target:  5'- -aAGGACCUGgaGGACCAGAaGGACCa -3'
miRNA:   3'- ccUCCUGGACgaCCUGGUCUaCCUGG- -5'
31661 5' -56.4 NC_006883.1 + 21811 0.8 0.309565
Target:  5'- uGAGGGCCaGCaGGACCAGGaccgccaccUGGACCa -3'
miRNA:   3'- cCUCCUGGaCGaCCUGGUCU---------ACCUGG- -5'
31661 5' -56.4 NC_006883.1 + 21854 0.68 0.896764
Target:  5'- uGGAgauGGuCCUGCUGGuCCAaGUGGuucACCu -3'
miRNA:   3'- -CCU---CCuGGACGACCuGGUcUACC---UGG- -5'
31661 5' -56.4 NC_006883.1 + 21886 0.85 0.164997
Target:  5'- uGGAGGACCaccaGCaGGACCAGA-GGACCa -3'
miRNA:   3'- -CCUCCUGGa---CGaCCUGGUCUaCCUGG- -5'
31661 5' -56.4 NC_006883.1 + 21929 0.69 0.870103
Target:  5'- uGGuccuGGuCCUGCUGGuCCuccaggucAGAUGGuCCa -3'
miRNA:   3'- -CCu---CCuGGACGACCuGG--------UCUACCuGG- -5'
31661 5' -56.4 NC_006883.1 + 21940 0.87 0.125831
Target:  5'- aGGAGGACCaGUUGGACCuGuUGGACCa -3'
miRNA:   3'- -CCUCCUGGaCGACCUGGuCuACCUGG- -5'
31661 5' -56.4 NC_006883.1 + 21973 0.82 0.258644
Target:  5'- aGGAGGACCUGCaGGACCAGGa-GAUCc -3'
miRNA:   3'- -CCUCCUGGACGaCCUGGUCUacCUGG- -5'
31661 5' -56.4 NC_006883.1 + 21979 0.69 0.870103
Target:  5'- --uGGuCCUGCUGGAUCuGcUGGugCg -3'
miRNA:   3'- ccuCCuGGACGACCUGGuCuACCugG- -5'
31661 5' -56.4 NC_006883.1 + 22016 0.8 0.316442
Target:  5'- -uAGGACCaGCaGGACCAGuUGGACCa -3'
miRNA:   3'- ccUCCUGGaCGaCCUGGUCuACCUGG- -5'
31661 5' -56.4 NC_006883.1 + 22042 0.76 0.523346
Target:  5'- --uGGACCUGUaGGACCGucUGGACCc -3'
miRNA:   3'- ccuCCUGGACGaCCUGGUcuACCUGG- -5'
31661 5' -56.4 NC_006883.1 + 22075 0.85 0.169056
Target:  5'- aGGAGGACCUGgaGGACCAccagcaGGACCa -3'
miRNA:   3'- -CCUCCUGGACgaCCUGGUcua---CCUGG- -5'
31661 5' -56.4 NC_006883.1 + 22099 0.77 0.441709
Target:  5'- --cGGACCUGgaGGACCAcuUGGACCn -3'
miRNA:   3'- ccuCCUGGACgaCCUGGUcuACCUGG- -5'
31661 5' -56.4 NC_006883.1 + 22154 0.84 0.200042
Target:  5'- -uAGGACCUGgaGGACCAGGugaaccacuUGGACCa -3'
miRNA:   3'- ccUCCUGGACgaCCUGGUCU---------ACCUGG- -5'
31661 5' -56.4 NC_006883.1 + 22204 0.79 0.360104
Target:  5'- uGGAGGACCaGCaGGACCAGGaccaccacuaGGACCu -3'
miRNA:   3'- -CCUCCUGGaCGaCCUGGUCUa---------CCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.